yevishere's tools [10 articles] Export

Recent papers added to yevishere's library classified by the tag tools. You can also see everyone's tools.

	A survey of DNA motif finding algorithms. [My Copy] BMC bioinformatics, Vol. 8 Suppl 7, No. Suppl 7. (2007) by Modan K. Das, Ho-Kwok K. Dai posted to mining motifs review tools by yevishere on 2008-01-08 00:27:21 as along with 17 people and 2 groups Dulce lusk wowalz svenrahmann isimpson daveGerrard coldmeadow druvus Stew emptyhb dquest nklee maximilianh csdhwang brant xili03 pradiptaray BergmanLab Bioinformatics - CRUK
	TFCONES: A database of vertebrate transcription factor-encoding genes and their associated conserved noncoding elements [My Copy] BMC Genomics, Vol. 8 (29 November 2007), 441. by Alison P. Lee, Yuchen Yang, Sydney Brenner, Byrappa Venkatesh posted to mining motifs tools by yevishere on 2008-01-08 00:26:52 as along with 3 people nklee maximilianh guhjy
	Effective transcription factor binding site prediction using a combination of optimization, a genetic algorithm and discriminant analysis to capture distant interactions [My Copy] BMC Bioinformatics, Vol. 8, No. 1. (2007) by Victor Levitsky, Elena Ignatieva, Elena Ananko, et al.Igor Turnaev, Tatyana Merkulova, Nikolay Kolchanov, T. Hodgman posted to mining motifs tools by yevishere on 2008-01-08 00:22:02 as along with 5 people druvus nklee maximilianh csdhwang xili03
	Toucan: deciphering the cis-regulatory logic of coregulated genes. [My Copy] Nucleic Acids Res, Vol. 31, No. 6. (15 March 2003), pp. 1753-1764. by S. Aerts, G. Thijs, B. Coessens, M. Staes, Y. Moreau, B. De Moor posted to mining motifs tools by yevishere on 2008-01-08 00:20:26 as along with 5 people and 1 group troels_marstrand kaspermunch nur77 nklee xili03 Bioinformatics
	A survey of motif discovery methods in an integrated framework [My Copy] Biology Direct, Vol. 1, No. 1. (06 April 2006), 11. by Geir K. Sandve, Finn Drabløs posted to mining motifs tools by yevishere on 2008-01-04 00:23:12 as along with 11 people and 1 group tomhebbron Scis0000002 maximilianh wowalz AbnerCYH aprasad dpollard samal csdhwang idonaldson yoonk EisenLab
	Discovering Motifs in Ranked Lists of DNA Sequences [My Copy] PLoS Computational Biology, Vol. 3, No. 3. (1 March 2007), e39. by Eran Eden, Doron Lipson, Sivan Yogev, Zohar Yakhini posted to motifs tools by yevishere on 2008-01-04 00:22:30 as along with 3 people and 1 group heliopais dpollard dquest EisenLab
	A graph-based motif detection algorithm models complex nucleotide dependencies in transcription factor binding sites. [My Copy] Nucleic Acids Res, Vol. 34, No. 20. (2006), pp. 5730-5739. by B. T. Naughton, E. Fratkin, S. Batzoglou, D. L. Brutlag posted to motifs tools by yevishere on 2008-01-04 00:20:45 as along with 4 people and 1 group indigoviolet nklee xili03 GustavoLacerda EisenLab
	GOstat: find statistically overrepresented Gene Ontologies within a group of genes [My Copy] Bioinformatics, Vol. 20, No. 9. (12 June 2004), pp. 1464-1465. by Tim Beissbarth, Terence P. Speed posted to tools by yevishere on 2008-01-04 00:19:57 as along with 9 people and 1 group jperkins vkwn leechuck Yanno miguel RMGraze indigoviolet jdiggans ellakat EisenLab
	Sequence logos: a new way to display consensus sequences. [My Copy] Nucleic acids research, Vol. 18, No. 20. (25 October 1990), pp. 6097-6100. by T. D. Schneider, R. M. Stephens posted to tools by yevishere on 2008-01-04 00:19:33 as along with 8 people and 1 group mgomes GustavoLacerda stubrown calderonv hplatero analogAI indigoviolet austin EisenLab
	WebLogo: a sequence logo generator. [My Copy] Genome research, Vol. 14, No. 6. (1 June 2004), pp. 1188-1190. by Gavin E. Crooks, Gary Hon, John-Marc M. Chandonia, Steven E. Brenner posted to tools by yevishere on 2008-01-04 00:16:26 as along with 15 people and 2 groups daforerog ramonvidal gwallau ivankel dsmueller GustavoLacerda rpetrenko calderonv hplatero dfgreen Mehlhorn analogAI indigoviolet xiaobeizhao sobolevnrm EisenLab baker-group

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hnf4	195
targets	158
s1a	126
pbm	18
mining	16
motifs	14
diabetes	10
tools	10
microarray	9
review	9
motif	8
expression	7
chipchip	6
analysis	5
interactions	4
labeling	4
pancreas	4
affymetrix	3
dutp	3
ligands	3
mapping	3
nuclear	3
receptor	3
toxicology	3
drugs	2
phosphorylation	2
aging	1
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coactivator	1
differentiation	1
dna	1
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hnf4gamma	1
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intestine	1
isoforms	1
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knockout	1
lentivirus	1
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motf	1
mutant	1
mutatant	1
myc	1
odom	1
prediction	1
pwm	1
qpcr	1
stem	1
taf1	1
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young	1

yevishere's tools [10 articles] Export

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