ynaito's computer-simulation [28 articles] Export

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	In silico modeling and metabolome analysis of long-stored erythrocytes to improve blood storage methods. [My Copy] Journal of biotechnology (18 August 2009) by Taiko Nishino, Ayako Yachie-Kinoshita, Akiyoshi Hirayama, Tomoyoshi Soga, Makoto Suematsu, Masaru Tomita posted to mt-rg erythrocyte e-cell computer-simulation by ynaito on 2009-09-24 02:07:04 as
	Multiple high-throughput analyses monitor the response of E. coli to perturbations. [My Copy] Science (New York, N.Y.), Vol. 316, No. 5824. (27 April 2007), pp. 593-597. by Nobuyoshi Ishii, Kenji Nakahigashi, Tomoya Baba, et al.Martin Robert, Tomoyoshi Soga, Akio Kanai, Takashi Hirasawa, Miki Naba, Kenta Hirai, Aminul Hoque, Pei Yee Y. Ho, Yuji Kakazu, Kaori Sugawara, Saori Igarashi, Satoshi Harada, Takeshi Masuda, Naoyuki Sugiyama, Takashi Togashi, Miki Hasegawa, Yuki Takai, Katsuyuki Yugi, Kazuharu Arakawa, Nayuta Iwata, Yoshihiro Toya, Yoichi Nakayama, Takaaki Nishioka, Kazuyuki Shimizu, Hirotada Mori, Masaru Tomita posted to systems-biology e-cell computer-simulation by ynaito on 2009-09-23 07:20:06 as along with 8 people and 1 group JeremyZucker cgaugain thomaskelder jjray raiyar dylan77 ytoya IgorG steinmetzlab
	Computational biology in the study of cardiac ion channels and cell electrophysiology [My Copy] Quarterly Reviews of Biophysics, Vol. 39, No. 01. (19 July 2006), pp. 57-116. by Yoram Rudy, Jonathan R. Silva posted to computer-simulation myocardium by ynaito on 2009-06-13 02:05:51 as along with 2 people and 1 group Dangerfc brocktice TulaneCEP
	Philosophical Basis and Some Historical Aspects of Systems Biology: From Hegel to Noble - Applications for Bioenergetic Research [My Copy] INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, Vol. 10, No. 3. (March 2009), pp. 1161-1192. by V. Saks, C. Monge, R. Guzun posted to computer-simulation electrophysiology kyoto-model systems-biology by ynaito on 2009-04-10 04:55:30 as
	Roles of Hemoglobin Allostery in Hypoxia-induced Metabolic Alterations in Erythrocytes: SIMULATION AND ITS VERIFICATION BY METABOLOME ANALYSIS [My Copy] J. Biol. Chem., Vol. 282, No. 14. (6 April 2007), pp. 10731-10741. by Ayako Kinoshita, Kosuke Tsukada, Tomoyoshi Soga, et al.Takako Hishiki, Yuki Ueno, Yoichi Nakayama, Masaru Tomita, Makoto Suematsu posted to computer-simulation e-cell mt-rg by ynaito on 2009-03-25 05:11:03 as along with 1 person and 1 group sobolevnrm baker-group
	A mathematical model for the Kai-protein-based chemical oscillator and clock gene expression rhythms in cyanobacteria. [My Copy] Journal of biological rhythms, Vol. 22, No. 1. (February 2007), pp. 69-80. by F. Miyoshi, Y. Nakayama, K. Kaizu, H. Iwasaki, M. Tomita posted to computer-simulation e-cell mt-rg by ynaito on 2009-03-25 05:08:42 as
	A simplified method for power-law modelling of metabolic pathways from time-course data and steady-state flux profiles [My Copy] Theoretical Biology and Medical Modelling, Vol. 3, No. 1. (17 July 2006), 24. by Tomoya Kitayama, Ayako Kinoshita, Masahiro Sugimoto, Yoichi Nakayama, Masaru Tomita posted to computer-simulation mt-rg by ynaito on 2009-03-25 05:06:26 as along with 1 person bertelsen
	A microarray data-based semi-kinetic method for predicting quantitative dynamics of genetic networks. [My Copy] BMC Bioinformatics, Vol. 6 (2005) by K. Yugi, Y. Nakayama, S. Kojima, T. Kitayama, M. Tomita posted to computer-simulation e-cell mt-rg by ynaito on 2009-03-25 05:04:27 as along with 2 people gespim bertelsen
	Hybrid dynamic/static method for large-scale simulation of metabolism [My Copy] Theoretical Biology and Medical Modelling, Vol. 2, No. 1. (2005), 42. by Katsuyuki Yugi, Yoichi Nakayama, Ayako Kinoshita, Masaru Tomita posted to computer-simulation e-cell mt-rg by ynaito on 2009-03-25 05:02:09 as along with 1 person abhishek_tiwari
	Dynamic simulation of red blood cell metabolism and its application to the analysis of a pathological condition [My Copy] Theoretical Biology and Medical Modelling, Vol. 2, No. 1. (2005) by Yoichi Nakayama, Ayako Kinoshita, Masaru Tomita posted to computer-simulation e-cell mt-rg by ynaito on 2009-03-25 05:01:48 as along with 2 people fishtank csanford
	Toward large-scale modeling of the microbial cell for computer simulation. [My Copy] J Biotechnol, Vol. 113, No. 1-3. (30 September 2004), pp. 281-294. by N. Ishii, M. Robert, Y. Nakayama, A. Kanai, M. Tomita posted to computer-simulation e-cell mt-rg by ynaito on 2009-03-25 05:01:24 as along with 9 people and 3 groups csanford eldan wnpx Doug cottrell livingthingdan josepe fishtank roland_ewald livingthing dIEMoSIRIS MoSi-Rostock
	[Computer models of plant metabolism] [My Copy] Tanpakushitsu kakusan koso. Protein, nucleic acid, enzyme, Vol. 48, No. 15 Suppl. (November 2003), pp. 2205-2210. by N. Ishii, Y. Nakayama, M. Tomita posted to computer-simulation e-cell japanese mt-rg by ynaito on 2009-03-25 04:59:45 as
	[E-Cell simulation system and its application to the modeling of circadian rhythm] [My Copy] Seikagaku. The Journal of Japanese Biochemical Society, Vol. 75, No. 1. (January 2003), pp. 5-16. by F. Miyoshi, Y. Nakayama, M. Tomita posted to computer-simulation e-cell japanese mt-rg by ynaito on 2009-03-25 04:59:13 as
	E-CELL: Software Environment for Whole Cell Simulation. [My Copy] Genome informatics. Workshop on Genome Informatics, Vol. 8 (1997), pp. 147-155. by M. Tomita, K. Hashimoto, K. Takahashi, et al.T. Shimizu, Y. Matsuzaki, F. Miyoshi, K. Saito, S. Tanida, K. Yugi, J. C. Venter, C. A. Hutchison posted to computer-simulation e-cell mt-rg by ynaito on 2009-03-24 14:19:51 as
	E-CELL: software environment for whole-cell simulation [My Copy] Bioinformatics, Vol. 15, No. 1. (1 January 1999), pp. 72-84. by M. Tomita, K. Hashimoto, K. Takahashi, et al.T. S. Shimizu, Y. Matsuzaki, F. Miyoshi, K. Saito, S. Tanida, K. Yugi, J. C. Venter, Ca Hutchison posted to computer-simulation e-cell mt-rg by ynaito on 2009-03-24 14:19:35 as along with 3 people antonkratz chrn johnpeterwalsh
	Simulation analysis of intracellular Na+ and Cl- homeostasis during beta 1-adrenergic stimulation of cardiac myocyte. [My Copy] Progress in biophysics and molecular biology, Vol. 96, No. 1-3. (r 2008), pp. 171-186. by M. Kuzumoto, A. Takeuchi, H. Nakai, C. Oka, A. Noma, S. Matsuoka posted to computer-simulation kyoto-model myocardium by ynaito on 2009-03-24 14:17:47 as
	Ionic mechanisms underlying the positive chronotropy induced by beta1-adrenergic stimulation in guinea pig sinoatrial node cells: a simulation study. [My Copy] The journal of physiological sciences : JPS, Vol. 58, No. 1. (February 2008), pp. 53-65. by Y. Himeno, N. Sarai, S. Matsuoka, A. Noma posted to computer-simulation kyoto-model myocardium by ynaito on 2009-03-24 14:16:43 as
	A simulation study to rescue the Na+/Ca2+ exchanger knockout mice. [My Copy] The journal of physiological sciences : JPS, Vol. 56, No. 3. (June 2006), pp. 211-217. by N. Sarai, T. Kobayashi, S. Matsuoka, A. Noma posted to computer-simulation kyoto-model myocardium by ynaito on 2009-03-24 14:16:21 as
	Modelling Cl- homeostasis and volume regulation of the cardiac cell. [My Copy] Philosophical transactions. Series A, Mathematical, physical, and engineering sciences, Vol. 364, No. 1842. (15 May 2006), pp. 1245-1265. by K. Terashima, A. Takeuchi, N. Sarai, et al.S. Matsuoka, E. B. Shim, C. H. Leem, A. Noma posted to computer-simulation kyoto-model myocardium by ynaito on 2009-03-24 14:15:51 as
	simBio: a Java package for the development of detailed cell models. [My Copy] Progress in biophysics and molecular biology, Vol. 90, No. 1-3. (r 2006), pp. 360-377. by N. Sarai, S. Matsuoka, A. Noma posted to computer-simulation kyoto-model myocardium by ynaito on 2009-03-24 14:15:28 as
	An in silico study of energy metabolism in cardiac excitation-contraction coupling. [My Copy] The Japanese journal of physiology, Vol. 54, No. 6. (December 2004), pp. 517-522. by S. Matsuoka, H. Jo, N. Sarai, A. Noma posted to computer-simulation kyoto-model myocardium by ynaito on 2009-03-24 14:15:01 as
	Simulation of ATP metabolism in cardiac excitation-contraction coupling. [My Copy] Progress in biophysics and molecular biology, Vol. 85, No. 2-3. (l 2004), pp. 279-299. by S. Matsuoka, N. Sarai, H. Jo, A. Noma posted to computer-simulation kyoto-model by ynaito on 2009-03-24 14:14:28 as
	Role of individual ionic current systems in the SA node hypothesized by a model study. [My Copy] The Japanese journal of physiology, Vol. 53, No. 2. (April 2003), pp. 125-134. by N. Sarai, S. Matsuoka, S. Kuratomi, K. Ono, A. Noma posted to computer-simulation kyoto-model by ynaito on 2009-03-24 14:14:03 as
	Role of individual ionic current systems in ventricular cells hypothesized by a model study. [My Copy] The Japanese journal of physiology, Vol. 53, No. 2. (April 2003), pp. 105-123. by S. Matsuoka, N. Sarai, S. Kuratomi, K. Ono, A. Noma posted to computer-simulation kyoto-model by ynaito on 2009-03-24 14:13:41 as
	E-Cell 2: multi-platform E-Cell simulation system. [My Copy] Bioinformatics, Vol. 19, No. 13. (1 September 2003), pp. 1727-1729. by K. Takahashi, N. Ishikawa, Y. Sadamoto, et al.H. Sasamoto, S. Ohta, A. Shiozawa, F. Miyoshi, Y. Naito, Y. Nakayama, M. Tomita posted to computer-simulation e-cell mt-rg by ynaito on 2009-03-24 14:09:55 as along with 2 people chrn mattis23
	Simulation of developmental changes in action potentials with ventricular cell models [My Copy] Systems and Synthetic Biology, Vol. 1, No. 1. (1 March 2007), pp. 11-23. by Hitomi Itoh, Yasuhiro Naito, Masaru Tomita posted to computer-simulation electrophysiology kyoto-model mt-rg myocardium by ynaito on 2009-03-24 13:28:19 as
	Construction of a biological tissue model based on a single-cell model: a computer simulation of metabolic heterogeneity in the liver lobule. [My Copy] Artificial life, Vol. 14, No. 1. (2008), pp. 3-28. by H. Ohno, Y. Naito, H. Nakajima, M. Tomita posted to computer-simulation liver metabolic-heterogeneity mt-rg by ynaito on 2009-03-24 13:19:32 as along with 1 person csanford
	Gluconeogenesis in rat liver cytosol. I. Computer analysis of experimental data. [My Copy] Computers and biomedical research, an international journal, Vol. 4, No. 1. (April 1971), pp. 65-106. by M. J. Achs, J. H. Anderson, D. Garfinkel posted to computer-simulation gluconeogenesis liver rodents by ynaito on 2009-03-24 13:13:07 as

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computer-simulation	28
mt-rg	25
evolution	13
e-cell	13
kyoto-model	11
myocardium	11
hemoglobin	10
systems-biology	10
facilitated-variation	6
gene-expression	4
liver	4
cps	3
rm	3
evolvability	3
mass-spectrometry	3
dna	3
selfish-gene	3
eye	2
japanese	2
review	2
development	2
adenovirus-vector	2
electrophysiology	2
genetic-code	1
erythrocyte	1
gluconeogenesis	1
metabolic-heterogeneity	1
gene-targeting	1
rodents	1
automaticity	1

ynaito's computer-simulation [28 articles] Export

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