yonatanf's library 83 articles Export

	Ecological Niche Modeling of <i>Coccidioides</i> spp. in Western North American Deserts [My Copy] Annals of the New York Academy of Sciences, Vol. 1111, No. Coccidioidomycosis Sixth International Symposium. (2007), pp. 35-46. by Raúl C. Baptista-Rosas, Alejandro Hinojosa, Meritxell Riquelme posted to fundamental niche niche-shape realized by yonatanf on 2009-05-20 22:27:13 as
	Recent studies on bacterial populations and processes in subseafloor sediments: A review [My Copy] Hydrogeology Journal, Vol. 8, No. 1. (1 March 2000), pp. 11-28. by John R. Parkes, Barry A. Cragg, Peter Wellsbury posted to deep-biosphere by yonatanf on 2009-05-19 20:57:04 as along with 1 person fornstar
	Deep bacterial biosphere in Pacific Ocean sediments [My Copy] Nature, Vol. 371, No. 6496. (1994), pp. 410-413. by R. J. Parkes, B. A. Cragg, S. J. Bale, et al.J. M. Getlifff, K. Goodman, P. A. Rochelle, J. C. Fry, A. J. Weightman, S. M. Harvey posted to deep-biosphere by yonatanf on 2009-05-19 20:54:21 as along with 1 person fornstar
	Prokaryotic cells of the deep sub-seafloor biosphere identified as living bacteria [My Copy] Nature, Vol. 433, No. 7028. (24 February 2005), pp. 861-864. by Axel Schippers, Lev N. Neretin, Jens Kallmeyer, et al.Timothy G. Ferdelman, Barry A. Cragg, R. John Parkes, Bo B. Jorgensen posted to deep-biosphere by yonatanf on 2009-05-19 20:52:10 as along with 1 person fornstar
	Distributions of Microbial Activities in Deep Subseafloor Sediments [My Copy] Science, Vol. 306, No. 5705. (24 December 2004), pp. 2216-2221. by Steven D'Hondt, Bo B. Jorgensen, Jay D. Miller, et al.Anja Batzke, Ruth Blake, Barry A. Cragg, Heribert Cypionka, Gerald R. Dickens, Timothy Ferdelman, Kai-Uwe Hinrichs, Nils G. Holm, Richard Mitterer, Arthur Spivack, Guizhi Wang, Barbara Bekins, Bert Engelen, Kathryn Ford, Glen Gettemy, Scott D. Rutherford, Henrik Sass, Gregory C. Skilbeck, Ivano W. Aiello, Gilles Guerin, Christopher H. House, Fumio Inagaki, Patrick Meister, Thomas Naehr, Sachiko Niitsuma, John R. Parkes, Axel Schippers, David C. Smith, Andreas Teske, Juergen Wiegel, Christian N. Padilla, Juana L. Acosta posted to deep-biosphere by yonatanf on 2009-05-19 20:49:24 as
	Significant contribution of Archaea to extant biomass in marine subsurface sediments [My Copy] Nature (20 July 2008) by Julius S. Lipp, Yuki Morono, Fumio Inagaki, Kai-Uwe Hinrichs posted to archaea deep-biosphere by yonatanf on 2009-05-19 20:42:46 as along with 3 people and 1 group claymans djkt neils iSEEM
	The Failure Law of Complex Equipment [My Copy] Journal of the Society for Industrial and Applied Mathematics, Vol. 8, No. 4. (1960), pp. 680-690. by R. F. Drenick posted to extreme-value extreme-value-distribution reliability by yonatanf on 2009-05-11 18:58:38 as
	Elements of the Theory of Extreme Values [My Copy] Technometrics, Vol. 2, No. 1. (1960), pp. 27-41. by Benjamin Epstein posted to distribution extreme-value extreme-value-distribution gumbel weibull by yonatanf on 2009-05-11 17:46:42 as
	Model Selection and Model Averaging in Phylogenetics: Advantages of Akaike Information Criterion and Bayesian Approaches over Likelihood Ratio Tests [My Copy] Systematic Biology, Vol. 53, No. 5. (2004), pp. 793-808. by David Posada, Thomas R. Buckley posted to aic model-selection phylogenetics phylogeny by yonatanf on 2009-05-07 23:58:28 as along with 1 person fierykylin
	Selecting the Best-Fit Model of Nucleotide Substitution [My Copy] Systematic Biology, Vol. 50, No. 4. (2001), pp. 580-601. by David Posada, Keith A. Crandall posted to model-selection phylogenetics phylogeny by yonatanf on 2009-05-07 23:55:24 as
	MODEL SELECTION IN PHYLOGENETICS [My Copy] Annual Review of Ecology, Evolution, and Systematics, Vol. 36, No. 1. (2005), pp. 445-466. by Jack Sullivan, Paul Joyce posted to model-selection phylogenetics phylogeny by yonatanf on 2009-05-07 23:46:15 as along with 1 person druvus
	Model selection in ecology and evolution [My Copy] Trends in Ecology & Evolution, Vol. 19, No. 2. (February 2004), pp. 101-108. by J. Johnson posted to model-selection by yonatanf on 2009-05-07 23:43:45 as along with 15 people and 3 groups beete mhasoba BioNica guhjy mroutley jmeppley almostc e2holmes cmm scis0000001 ajw gareth jasonn hkreysa bpcusack Savage Lab, UCLA FAB-lab PsychStatsBanter
	Metabolic modelling of microbes: the flux-balance approach [My Copy] Environmental Microbiology, Vol. 4, No. 3. (2002), pp. 133-140. by Jeremy S. Edwards, Markus Covert, Bernhard Palsson posted to fba flux flux-balance by yonatanf on 2009-05-06 23:16:29 as
	Metabolic Flux Balancing: Basic Concepts, Scientific and Practical Use [My Copy] Nat Biotech, Vol. 12, No. 10. (October 1994), pp. 994-998. by Amit Varma, Bernhard O. Palsson posted to fba flux flux-balance by yonatanf on 2009-05-06 23:07:14 as along with 4 people winterstream roys Ema pmendes
	Advances in flux balance analysis [My Copy] Current Opinion in Biotechnology, Vol. 14, No. 5. (October 2003), pp. 491-496. by Kenneth J. Kauffman, Purusharth Prakash, Jeremy S. Edwards posted to fba flux flux-balance by yonatanf on 2009-05-06 22:51:46 as
	Maximum-likelihood estimation of phylogeny from DNA sequences when substitution rates differ over sites. [My Copy] Mol Biol Evol, Vol. 10, No. 6. (November 1993), pp. 1396-1401. by Z. Yang posted to maximum-likelihood ml phylogeny by yonatanf on 2009-05-04 16:34:07 as along with 2 people bpb timflutre
	Maximum likelihood phylogenetic estimation from DNA sequences with variable rates over sites: Approximate methods [My Copy] Journal of Molecular Evolution, Vol. 39, No. 3. (1994), pp. 306-314. by Ziheng Yang posted to maximum-likelihood ml phylogeny by yonatanf on 2009-05-04 16:29:37 as along with 1 person CharlesM
	Inferring pattern and process: maximum-likelihood implementation of a nonhomogeneous model of DNA sequence evolution for phylogenetic analysis [My Copy] Mol Biol Evol, Vol. 15, No. 7. (1 July 1998), pp. 871-879. by N. Galtier, M. Gouy posted to acquisition maximum-likelihood ml phylogeny by yonatanf on 2009-05-04 16:25:21 as along with 2 people aprasad cjeans
	Bayesian Analysis of Correlated Evolution of Discrete Characters by Reversible-Jump Markov Chain Monte Carlo. [My Copy] The American naturalist, Vol. 167, No. 6. (9 May 2006) by Mark Pagel, Andrew Meade posted to ancetral-state phylogeny reconstruction by yonatanf on 2009-04-30 00:14:48 as along with 1 person and 1 group rvosa FAB-lab
	A Phylogenetic Mixture Model for Detecting Pattern-Heterogeneity in Gene Sequence or Character-State Data [My Copy] Systematic Biology, Vol. 53, No. 4. (2004), pp. 571-581. by Mark Pagel, Andrew Meade posted to ancetral-state reconstruction by yonatanf on 2009-04-30 00:13:19 as
	Bayesian Estimation of Ancestral Character States on Phylogenies [My Copy] Systematic Biology, Vol. 53, No. 5. (2004), pp. 673-684. by Mark Pagel, Andrew Meade, Daniel Barker posted to ancetral-state evolution phylogeny state by yonatanf on 2009-04-30 00:07:06 as
	A note on the concepts of age distribution and transit time in natural reservoirs [My Copy] Tellus, Vol. 25 (May 1973), 58. by B. Bolin, H. Rodhe posted to decay exponential rando-rates relaxation by yonatanf on 2009-04-21 23:07:30 as along with 1 person fornstar
	Elements of a Theory for the Mechanisms Controlling Abundance, Diversity, and Biogeochemical Role of Lytic Bacterial Viruses in Aquatic Systems [My Copy] Limnology and Oceanography, Vol. 45, No. 6. (2000), pp. 1320-1328. by Frede T. Thingstad posted to dynamics ecology kill-the-winner marine virus by yonatanf on 2009-04-03 22:00:27 as
	Theory of size distribution in ecological communities [My Copy] Journal of the Fisheries Research Board of Canada, Vol. 31, No. 12. (1974), pp. 1859-1862. by Kerr posted to body-size ecology scaling by yonatanf on 2009-04-03 20:34:25 as
	Inferring evolutionary processes from phylogenies [My Copy] Zoologica Scripta, Vol. 26, No. 4. (1997), pp. 331-348. by M. A. R. K. Pagel posted to maximum-likelihood ml phylogenetics phylogeny by yonatanf on 2009-03-31 23:25:25 as
	Viruses in the sea [My Copy] Nature, Vol. 437, No. 7057. (14 September 2005), pp. 356-361. by Curtis A. Suttle posted to diversity ecology marine phage review virus by yonatanf on 2009-03-31 01:27:48 as along with 3 people and 1 group dayjm zukeboy jdelcampo Microbial-Ecology
	Marine viruses--major players in the global ecosystem. [My Copy] Nature reviews. Microbiology, Vol. 5, No. 10. (October 2007), pp. 801-812. by Curtis A. Suttle posted to diversity ecology phage review virus by yonatanf on 2009-03-31 01:26:20 as along with 2 people and 1 group idoerg kinestetika microbiology_nijmegen
	Here a virus, there a virus, everywhere the same virus? [My Copy] Trends Microbiol, Vol. 13, No. 6. (June 2005), pp. 278-284. by M. Breitbart, F. Rohwer posted to ecology virus by yonatanf on 2009-03-31 01:23:23 as along with 1 person AaronDarling
	Quantitative Laws in Metabolism and Growth [My Copy] The Quarterly Review of Biology, Vol. 32, No. 3. (1957), pp. 217-231. by Ludwig von Bertalanffy posted to metabolism by yonatanf on 2009-03-25 23:33:36 as
	Adaptive evolution of phytoplankton cell size. [My Copy] The American naturalist, Vol. 166, No. 4. (October 2005), pp. 496-505. by L. Jiang, O. M. Schofield, P. G. Falkowski posted to ecology marine npz by yonatanf on 2009-03-25 22:40:40 as
	Top-Down Control of Cyanobacteria: A Theoretical Analysis [My Copy] The American Naturalist, Vol. 153, No. 1. (1999), pp. 59-72. by Alessandra Gragnani, Marten Scheffer, Sergio Rinaldi posted to ecology predation selection top-down by yonatanf on 2009-03-25 22:35:06 as
	Oxygen, animals and oceanic ventilation: an alternative view [My Copy] Geobiology, Vol. 7, No. 1., pp. 1-7. by N. J. BUTTERFIELD posted to ecology marine by yonatanf on 2009-03-25 22:32:09 as
	Community Structure, Population Control, and Competition [My Copy] The American Naturalist, Vol. 94, No. 879. (1 January 1960), 421. by Nelson G. Hairston, Frederick E. Smith, Lawrence B. Slobodkin posted to community community-structure competition ecology by yonatanf on 2009-03-25 22:28:30 as
	Relation Between Biomass and Body Weight of Plankton in a Steady State Oceanic Ecosystem [My Copy] Limnology and Oceanography, Vol. 31, No. 2. (1986), pp. 361-370. by Jaime Rodriguez, Michael M. Mullin posted to allometry biomass ecology metabolism scaling by yonatanf on 2009-03-18 21:32:27 as
	Products, requirements and efficiency of biosynthesis: a quantitative approach. [My Copy] Journal of theoretical biology, Vol. 45, No. 2. (June 1974), pp. 339-377. by F. W. Penning de Vries, A. H. Brunsting, H. H. van Laar posted to conversion-efficiency ecology growth-effieciency metabolism by yonatanf on 2009-03-18 16:49:39 as
	CONVERSION EFFICIENCIES IN HETEROTROPHIC ORGANISMS [My Copy] Biological Reviews, Vol. 52, No. 3. (1977), pp. 385-409. by P. Calow posted to conversion-efficiency ecology growth-effieciency metabolism by yonatanf on 2009-03-18 16:45:13 as
	Consumer growth efficiencies: their limits and relationships to ecological energetics [My Copy] Journal of theoretical biology, Vol. 93, No. 4. (1981), pp. 805-828. by L. A. Schroeder posted to conversion-efficiency ecology growth-effieciency metabolism by yonatanf on 2009-03-18 16:38:56 as
	Applications in Ecology [My Copy] In Lognormal Distributions (1988), pp. 303-330. by Brian Dennis, G. P. Patil edited by Edwin L. Crow, Kunio Shimizu posted to ecology lognormal stochastic by yonatanf on 2009-03-18 16:28:08 as along with 1 person fornstar
	Stochastic Population Dynamics in Ecology and Conservation (Oxford Series in Ecology and Evolution) [My Copy] (05 June 2003) by Russell Lande, Steinar Engen, Bernt-Erik Saether posted to ecology lognormal stochastic by yonatanf on 2009-03-18 16:26:11 as along with 2 people fornstar skumagai
	Population dynamic models generating the lognormal species abundance distribution [My Copy] Mathematical Biosciences, Vol. 132, No. 2. (March 1996), pp. 169-183. by S. Engen, R. Lande posted to ecology lognormal by yonatanf on 2009-03-18 16:25:39 as along with 1 person fornstar
	Lognormal Distributions (Statistics: a Series of Textbooks and Monogrphs) [My Copy] (29 December 1987) by E. L. Crow, K. Shimizu posted to ecology lognormal by yonatanf on 2009-03-18 16:25:10 as along with 1 person fornstar
	The logarithm in biology. 1. Mechanisms generating the log-normal distribution exactly. [My Copy] Journal of theoretical biology, Vol. 12, No. 2. (November 1966), pp. 276-290. by A. L. Koch posted to distribution lognormal by yonatanf on 2009-03-17 21:22:13 as
	Using Bayesian Networks to Analyze Expression Data [My Copy] Journal of Computational Biology, Vol. 7, No. 3-4. (August 2000), pp. 601-620. by Nir Friedman, Michal Linial, Iftach Nachman, Dana Pe'er posted to bayesian bayesian-network byes gene-expression modeling network by yonatanf on 2009-03-13 22:33:50 as along with 11 people ruichu cswinburne siebert brl ldfu dragonrez Schmidtc wnpx helsley heliopais srp33
	Effects of Body Size and Temperature on Population Growth. [My Copy] The American Naturalist, Vol. 163, No. 3. (1 March 2004), pp. 429-441. by Van M Savage, James f Gillooly, James h Brown, Geoffrey b West, Eric l Charnov posted to body-size ecology metabolism scaling temperature by yonatanf on 2009-03-12 23:44:38 as along with 1 person wiktorj
	Physiology (communication arising): Why does metabolic rate scale with body size? [My Copy] Nature, Vol. 421, No. 6924. (13 February 2003), pp. 713-713. by Geoffrey B. West, Van M. Savage, James Gillooly, Brian J. Enquist, William H. Woodruff, James H. Brown posted to body-size metabolism scaling by yonatanf on 2009-03-12 23:38:58 as
	Effects of Size and Temperature on Metabolic Rate [My Copy] Science, Vol. 293, No. 5538. (21 September 2001), pp. 2248-2251. by James F. Gillooly, James H. Brown, Geoffrey B. West, Van M. Savage, Eric L. Charnov posted to ecology metabolism scaling by yonatanf on 2009-03-12 23:35:57 as along with 4 people and 1 group schwartzjmc anphony vsavage meli386 Savage Lab, UCLA
	Linking the global carbon cycle to individual metabolism [My Copy] Functional Ecology, Vol. 19, No. 2. (April 2005), pp. 202-213. by A. Allen, J. Gillooly, J. Brown posted to carbon-cycle ecology metabolism model scaling by yonatanf on 2009-03-12 23:32:01 as
	Constant- and variable-yield models of population growth: Responses to environmental variability and implications for competition* [My Copy] Journal of Theoretical Biology, Vol. 158, No. 4. (21 October 1992), pp. 409-428. by J. Grover posted to chemostat competition ecology internal-stores model variable-yield by yonatanf on 2009-03-04 20:43:02 as
	Detecting Correlated Evolution on Phylogenies: A General Method for the Comparative Analysis of Discrete Characters [My Copy] Proceedings: Biological Sciences, Vol. 255, No. 1342. (1994), pp. 37-45. by Mark Pagel posted to evolution markov maximum-likelihood model phylogenetics phylogeny by yonatanf on 2009-03-04 01:04:47 as
	A tutorial on hidden Markov models and selected applications in speech recognition [My Copy] Proceedings of the IEEE In Proceedings of the IEEE, Vol. 77, No. 2. (06 August 2002), pp. 257-286. by L. R. Rabiner posted to hidden hmm markov review theory by yonatanf on 2009-03-03 22:46:07 as along with 53 people and 8 groups amoreno bklynbam ianhales pascanur mtecha roys wasteland93 tkollar matjes mthomure hawkes db344 ashleygeorge rodri mhp0814 gkoenig muraken robotact albert_swart gulkur sergut ppeeling alexr pcahan1 mdhussein mcastillo daveh neveaire pool007 gonza_bp takahi jford neilc pratap bcroy tkravitz dominikschmidt sancho Alice2Nice zeppe karthik_ravikanti poluxmoon sachina maxp tgyork asterix77 yangxian ulmer julianpan rlichten wenhan huangsong tdahl searchingspeech2010 MiGen Project Autoregulation Biostatistics Computational-Genomics Bioinformatics Neuroscience MAML

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ecology	32
review	13
evolution	11
phylogeny	11
metabolism	9
niche	9
theory	8
model	7
maximum-likelihood	6
resource	6
scaling	6
competition	5
deep-biosphere	5
lognormal	5
ml	5
phylogenetics	5
diversity	4
environment	4
isobologram	4
marine	4
model-selection	4
virus	4
ancetral-state	3
body-size	3
chemostat	3
conversion-efficiency	3
distribution	3
fba	3
flux	3
flux-balance	3
growth-effieciency	3
microbial	3
variable-yield	3
2d-gradient	2
acquisition	2
component	2
extreme-value	2
extreme-value-distribution	2
handicap	2
hgt	2
interaction	2
internal-stores	2
markov	2
niche-shape	2
phage	2
principle	2
reconstruction	2
selection	2
signal	2
species	2
state	2
stochastic	2
two	2
varying	2
walk	2
abundance	1
adaptive	1
aic	1
allometry	1
approximation	1
archaea	1
bacteria	1
bayesian	1
bayesian-network	1
bias	1
biomass	1
book	1
byes	1
carbon-cycle	1
codon	1
community	1
community-structure	1
concept	1
decay	1
deletion	1
dynamics	1
ecotype	1
environmental-factors	1
eric	1
estimation	1
exponential	1
fitness	1
flight	1
fluctuating	1
foraging	1
fundamental	1
fussion	1
gene-expression	1
genome	1
graphical	1
gumbel	1
hidden	1
histidine	1
hmm	1
indel	1
insertaion	1
intensive	1
isobole	1
kill-the-winner	1
kinase	1
landscape	1
levy	1
method	1
modeling	1
multidrug	1
mutation	1
mutidrug	1
network	1
networks	1
npz	1
optimal	1
partition	1
pattern	1
predation	1
protein	1
quasi	1
rando-rates	1
rank	1
rates	1
realized	1
recombination	1
relaxation	1
reliability	1
robustness	1
rosetta	1
scale	1
selective	1
sexual	1
signaling	1
steady	1
survey	1
sweep	1
tansduction	1
temperature	1
thepeutics	1
theraputics	1
top-down	1
transduction	1
variation	1
vibrio	1
vis	1
weibull	1

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