yongzhao's flex [19 articles] Export

Recent papers added to yongzhao's library classified by the tag flex. You can also see everyone's flex.

	FLIPDock: Docking flexible ligands into flexible receptors [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 68, No. 3. (23 May 2007), pp. 726-737. by Yong Zhao, Michel F. Sanner posted to cross_docking docking flex induced_fit rotamer_lib side_chain by yongzhao on 2007-07-27 17:59:04 as along with 7 people and 1 group npt11tpn fl karinaecomp BragilMassoud kazemi somak LamBras TSRI_MGL
	Protein flexibility and drug design: how to hit a moving target [My Copy] Current Opinion in Chemical Biology, Vol. 6, No. 4. (1 August 2002), pp. 447-452. by Heather A. Carlson posted to review flex by yongzhao on 2007-01-22 19:39:07 as along with 1 person and 1 group LamBras TSRI_MGL
	Ensemble docking of multiple protein structures: Considering protein structural variations in molecular docking [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 66, No. 2. (9 November 2007), pp. 399-421. by Sheng-You Huang, Xiaoqin Zou posted to cross_docking flex multiple potential_app by yongzhao on 2007-01-08 18:29:14 as along with 8 people and 2 groups nickolay oteri AliceWang BragilMassoud bicko kazemi hmk LamBras Structural Biology Group TorVergata TSRI_MGL
	A method for including protein flexibility in protein-ligand docking: improving tools for database mining and virtual screening. [My Copy] J Mol Graph Model, Vol. 18, No. 3. (June 2000) by H. B. Broughton posted to docking flex induced_fit screening by yongzhao on 2007-01-03 21:43:02 as along with 2 people and 1 group kazemi LamBras TSRI_MGL
	Dynamite: a simple way to gain insight into protein motions. [My Copy] Acta crystallographica. Section D, Biological crystallography, Vol. 60, No. Pt 12 Pt 1. (01 December 2004), pp. 2280-2287. by C. Paul Barrett, Benjamin A. Hall, Martin E. Noble posted to conformation_sampling flex by yongzhao on 2006-10-24 02:58:49 as along with 4 people and 1 group arifor dimka aqeel choonpeng TSRI_MGL
	Identification of a minimal subset of receptor conformations for improved multiple conformation docking and two-step scoring. [My Copy] J Chem Inf Comput Sci, Vol. 44, No. 1. (b 2004), pp. 88-96. by S. Yoon, W. J. Welsh posted to docking docking_design flex by yongzhao on 2006-05-03 22:00:20 as along with 1 person and 1 group dgruiz TSRI_MGL
	Ligand-induced conformational changes: improved predictions of ligand binding conformations and affinities. [My Copy] Biophys J, Vol. 84, No. 4. (April 2003), pp. 2273-2281. by T. M. Frimurer, G. H. Peters, L. F. Iversen, H. S. Andersen, N. P. Møller, O. H. Olsen posted to docking flex by yongzhao on 2006-05-03 21:53:58 as along with 4 people and 1 group oteri dgruiz blackbart kazemi TSRI_MGL
	A method for biomolecular structural recognition and docking allowing conformational flexibility. [My Copy] J Comput Biol, Vol. 5, No. 4. (1998), pp. 631-654. by B. Sandak, R. Nussinov, H. J. Wolfson posted to docking_design flex by yongzhao on 2006-05-03 21:50:56 as along with 1 person and 1 group kazemi TSRI_MGL
	Flexible protein-protein docking [My Copy] Current Opinion in Structural Biology In Theory and simulation/Macromolecular assemblages - Joel Janin and Michael Levitt/Edward H Egelman and Andrew GW Leslie, Vol. 16, No. 2. (April 2006), pp. 194-200. by Alexandre M. J. J. Bonvin posted to docking flex by yongzhao on 2006-05-03 00:40:08 as along with 11 people and 3 groups timg flbarroso oteri laurabailey dgruiz aqeel bicko ima sangeetha gloria higueruelo Bioinformatics TSRI_MGL insilicodrug
	FDS: Flexible ligand and receptor docking with a continuum solvent model and soft-core energy function [My Copy] Journal of Computational Chemistry, Vol. 24, No. 13. (12 August 2003), pp. 1637-1656. by Richard D. Taylor, Philip J. Jewsbury, Jonathan W. Essex posted to flex by yongzhao on 2006-02-23 04:05:14 as along with 3 people and 1 group oteri dgruiz blackbart TSRI_MGL
	IMPLICATIONS OF PROTEIN FLEXIBILITY FOR DRUG DISCOVERY [My Copy] Nat Rev Drug Discov, Vol. 2, No. 7. (July 2003), pp. 527-541. by Simon J. Teague posted to flex induced_fit review by yongzhao on 2006-02-15 23:50:29 as along with 1 person and 1 group oteri TSRI_MGL
	Protein domain movements: Detection of rigid domains and visualization of hinges in comparisons of atomic coordinates [My Copy] Proteins: Structure, Function, and Genetics, Vol. 29 (1997), pp. 1-14. by Willy Wriggers, Klaus Schulten posted to flex by yongzhao on 2006-02-09 00:08:48 as along with 1 person and 1 group nigham TSRI_MGL
	Accounting for global protein deformability during protein-protein and protein-ligand docking. [My Copy] Biochim Biophys Acta (5 October 2005) by Andreas May, Martin Zacharias posted to flex by yongzhao on 2005-12-14 18:58:31 as along with 3 people and 1 group flbarroso alexg qzhang TSRI_MGL
	Protein flexibility in ligand docking and virtual screening to protein kinases. [My Copy] J Mol Biol, Vol. 337, No. 1. (12 March 2004), pp. 209-225. by C. N. Cavasotto, R. A. Abagyan posted to cross_docking flex induced_fit by yongzhao on 2005-11-30 21:05:50 as along with 9 people and 3 groups flbarroso oteri BragilMassoud dgruiz sangeetha anwazo daevans kazemi LamBras Bioinformatics TSRI_MGL insilicodrug
	A simple method to predict protein flexibility using secondary chemical shifts. [My Copy] Journal of the American Chemical Society, Vol. 127, No. 43. (2 November 2005), pp. 14970-14971. by Mark V. Berjanskii, David S. Wishart posted to flex by yongzhao on 2005-11-07 23:17:19 as along with 6 people and 1 group laurabailey rpetrenko viktor21614 dsekaran apaydin allmensch TSRI_MGL
	Receptor flexibility in de novo ligand design and docking. [My Copy] J Med Chem, Vol. 48, No. 21. (20 October 2005), pp. 6585-6596. by I. L. Alberts, N. P. Todorov, P. M. Dean posted to docking flex side_chain by yongzhao on 2005-10-16 22:24:14 as along with 4 people and 1 group BragilMassoud dgruiz apaydin kazemi TSRI_MGL
	Protein flexibility prediction by an all-atom mean-field statistical theory. [My Copy] Protein Sci, Vol. 14, No. 7. (July 2005), pp. 1772-1777. by B. P. Pandey, C. Zhang, X. Yuan, J. Zi, Y. Zhou posted to flex by yongzhao on 2005-10-09 20:08:27 as along with 3 people and 2 groups baaden aqeel jessicaopacic TSRI_MGL LabCompMed
	Lessons in Molecular Recognition: The Effects of Ligand and Protein Flexibility on Molecular Docking Accuracy [My Copy] posted to flex by yongzhao on 2005-09-28 01:01:55 as along with 1 group TSRI_MGL
	Hierarchical docking of databases of multiple ligand conformations. [My Copy] Curr Top Med Chem, Vol. 5, No. 8. (2005), pp. 739-749. by D. M. Lorber, B. K. Shoichet posted to flex ligand by yongzhao on 2005-09-16 06:23:40 as along with 2 people and 1 group oteri blackbart TSRI_MGL

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docking	37
docking_design	21
flex	19
screening	16
induced_fit	11
loop	10
potential_app	10
cross_docking	8
cryoem	8
hiv	8
review	8
side_chain	8
normal_mode_analysis	7
ga	5
library	5
mine	5
multiple	5
score	5
hivin	4
conformation_sampling	3
domain_analysis	3
p450	3
search	3
essential_dynamics	2
rotamer_lib	2
shape	2
autodock	1
bace	1
colony_energy	1
database	1
essential-dynamics	1
gaussian_network_model	1
ligand	1
ligand_based	1
metadynamics	1
molecular_dynamics	1
motion_database	1
protein_protein_docking	1
qsar	1
reranking	1
rmsd	1
rt	1
sampling	1
structures	1
t_cell	1
visualization	1

yongzhao's flex [19 articles] Export

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