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yusdi's single_molecule [59 articles]

Recent papers added to yusdi's library classified by the tag single_molecule. You can also see everyone's single_molecule.
  • Monitoring Protein Conformation along the Pathway of Chaperonin-Assisted Folding
    Cell, Vol. 133 (4 April 2008), pp. 142-153.
    by Shruti Sharma, Kausik Chakraborty, Barbara K Müller, Nagore Astola, Yun-Chi Tang, Don C Lamb, Manajit Hayer-Hartl, Ulrich F Hartl
    posted to single_molecule by yusdi on 2008-04-05 16:20:08 as ****
  • Quantum dots for live cells, in vivo imaging, and diagnostics.
    Science, Vol. 307, No. 5709. (28 January 2005), pp. 538-544.
    by X Michalet, FF Pinaud, LA Bentolila, JM Tsay, S Doose, JJ Li, G Sundaresan, AM Wu, SS Gambhir, S Weiss
    posted to single_molecule by yusdi on 2008-04-05 16:16:13 as ** along with 2 people eravikrishnan mekhala
  • Multicolor Single-Molecule Spectroscopy with Alternating Laser Excitation for the Investigation of Interactions and Dynamics
    J. Phys. Chem. B (9 November 2006)
    by J Ross, P Buschkamp, D Fetting, A Donnermeyer, CM Roth, P Tinnefeld
    posted to alex single_molecule by yusdi on 2008-04-05 16:13:06 as ***** along with 1 person and 1 group samjlord moernerlab
  • Three-dimensional imaging of single molecules solvated in pores of poly(acrylamide) gels.
    Science (New York, N.Y.), Vol. 274, No. 5289. (8 November 1996), pp. 966-969.
    by RM Dickson, DJ Norris, YL Tzeng, WE Moerner
    posted to classic single_molecule by yusdi on 2008-04-05 16:00:45 as **
  • Single-molecule fluorescence resonance energy transfer reveals a dynamic equilibrium between closed and open conformations of syntaxin 1
    PNAS, Vol. 100, No. 26. (23 December 2003), pp. 15516-15521.
    by M Margittai, J Widengren, E Schweinberger, GF Schroder, S Felekyan, E Haustein, M Konig, D Fasshauer, H Grubmuller, R Jahn, CAM Seidel
    posted to fret single_molecule by yusdi on 2008-04-05 15:49:59 as ** along with 1 person satulovsky
  • Single-molecule studies of SNARE complex assembly reveal parallel and antiparallel configurations.
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 100, No. 25. (9 December 2003), pp. 14800-14805.
    by K Weninger, ME Bowen, S Chu, AT Brunger
    posted to single_molecule by yusdi on 2008-04-05 15:49:29 as **
  • The ATP-waiting conformation of rotating F1-ATPase revealed by single-pair fluorescence resonance energy transfer.
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 100, No. 16. (5 August 2003), pp. 9314-9318.
    by R Yasuda, T Masaike, K Adachi, H Noji, H Itoh, K Kinosita
    posted to fret single_molecule by yusdi on 2008-04-05 15:48:51 as **
  • Single-molecule observations of neck linker conformational changes in the kinesin motor protein
    Nature Structural & Molecular Biology, Vol. 13, No. 10. (01 October 2006), pp. 887-894.
    by Michio Tomishige, Nico Stuurman, Ronald D Vale
    posted to single_molecule by yusdi on 2008-04-05 15:48:10 as ** along with 3 people and 1 group baaden samjlord qwermish moernerlab
  • Stepwise protein-mediated RNA folding directs assembly of telomerase ribonucleoprotein
    Nature (25 February 2007)
    by Michael D Stone, Mariana Mihalusova, Catherine M O’connor, Ramadevi Prathapam, Kathleen Collins, Xiaowei Zhuang
    posted to single_molecule by yusdi on 2008-04-05 15:47:29 as **
  • Probing the free-energy surface for protein folding with single-molecule fluorescence spectroscopy
    Nature, Vol. 419, No. 6908. (17 October 2002), pp. 743-747.
    by Benjamin Schuler, Everett A Lipman, William A Eaton
    posted to protein_folding single_molecule by yusdi on 2008-04-05 15:46:01 as **** along with 1 person FBerkemeier
  • Watching proteins fold one molecule at a time.
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 100, No. 6. (18 March 2003), pp. 3197-3202.
    by E Rhoades, E Gussakovsky, G Haran
    posted to protein_folding single_molecule by yusdi on 2008-04-05 15:45:13 as ****
  • Single-molecule protein folding: Diffusion fluorescence resonance energy transfer studies of the denaturation of chymotrypsin inhibitor 2
    PNAS, Vol. 97, No. 10. (9 May 2000), pp. 5179-5184.
    by Ashok A Deniz, Ted A Laurence, Gangamani S Beligere, Maxime Dahan, Andrew B Martin, Daniel S Chemla, Philip E Dawson, Peter G Schultz, Shimon Weiss
    posted to fret protein_folding single_molecule by yusdi on 2008-04-05 15:44:45 as **** along with 2 people seamus1089 FBerkemeier
  • Studies on the structure and dynamics of the human telomeric G quadruplex by single-molecule fluorescence resonance energy transfer.
    Proc Natl Acad Sci U S A, Vol. 100, No. 25. (9 December 2003), pp. 14629-14634.
    by L Ying, JJ Green, H Li, D Klenerman, S Balasubramanian
    posted to fret single_molecule by yusdi on 2008-04-05 15:43:54 as ** along with 1 person bpagano
  • Observing spontaneous branch migration of Holliday junctions one step at a time.
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 102, No. 16. (19 April 2005), pp. 5715-5720.
    by SA McKinney, AD Freeman, DM Lilley, T Ha
    posted to single_molecule tirf by yusdi on 2008-04-05 15:43:13 as **
  • Structural dynamics of individual Holliday junctions.
    Nature structural biology, Vol. 10, No. 2. (February 2003), pp. 93-97.
    by SA McKinney, AC Déclais, DM Lilley, T Ha
    posted to single_molecule tirf by yusdi on 2008-04-05 15:42:20 as **
  • Correlating structural dynamics and function in single ribozyme molecules.
    Science (New York, N.Y.), Vol. 296, No. 5572. (24 May 2002), pp. 1473-1476.
    by X Zhuang, H Kim, MJ Pereira, HP Babcock, NG Walter, S Chu
    posted to single_molecule by yusdi on 2008-04-05 15:40:59 as ****
  • Multiparameter single-molecule fluorescence spectroscopy reveals heterogeneity of HIV-1 reverse transcriptase:primer/template complexes.
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 100, No. 4. (18 February 2003), pp. 1655-1660.
    by PJ Rothwell, S Berger, O Kensch, S Felekyan, M Antonik, BM Wöhrl, T Restle, RS Goody, CA Seidel
    posted to single_molecule by yusdi on 2008-04-05 15:40:18 as ** along with 1 person dna
  • tRNA dynamics on the ribosome during translation.
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 101, No. 35. (31 August 2004), pp. 12893-12898.
    by SC Blanchard, HD Kim, RL Gonzalez, JD Puglisi, S Chu
    posted to single_molecule by yusdi on 2008-04-05 15:39:33 as **
  • tRNA selection and kinetic proofreading in translation.
    Nature structural & molecular biology, Vol. 11, No. 10. (October 2004), pp. 1008-1014.
    by SC Blanchard, RL Gonzalez, HD Kim, S Chu, JD Puglisi
    posted to single_molecule by yusdi on 2008-04-05 15:38:52 as **
  • NC2 mobilizes TBP on core promoter TATA boxes
    Nature Structural & Molecular Biology, Vol. 14, No. 12. (11 November 2007), pp. 1196-1201.
    by Peter Schluesche, Gertraud Stelzer, Elisa Piaia, Don C Lamb, Michael Meisterernst
    posted to fret single_molecule by yusdi on 2008-04-05 15:37:52 as ****
  • Single-molecule tracking of mRNA exiting from RNA polymerase II.
    Proc Natl Acad Sci U S A (28 December 2007)
    by Joanna Andrecka, Robert Lewis, Florian Brückner, Elisabeth Lehmann, Patrick Cramer, Jens Michaelis
    posted to fret rnap single_molecule transcription by yusdi on 2008-04-05 15:32:33 as **** along with 1 person margaritis
  • Ratiometric measurement and identification of single diffusing molecules
    Chemical Physics, Vol. 247, No. 1. (1 August 1999), pp. 85-106.
    by Maxime Dahan, Ashok A Deniz, Taekjip Ha, Daniel S Chemla, Peter G Schultz, Shimon Weiss
    posted to classic fret single_molecule by yusdi on 2008-04-05 15:31:12 as ** along with 1 person seamus1089
  • Single-pair fluorescence resonance energy transfer on freely diffusing molecules: observation of Förster distance dependence and subpopulations.
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 96, No. 7. (30 March 1999), pp. 3670-3675.
    by AA Deniz, M Dahan, JR Grunwell, T Ha, AE Faulhaber, DS Chemla, S Weiss, PG Schultz
    posted to classic fret single_molecule by yusdi on 2008-04-05 15:26:21 as ****
  • New fluorescent tools for watching nanometer-scale conformational changes of single molecules.
    Annual review of biophysics and biomolecular structure, Vol. 36 (2007), pp. 349-369.
    by E Toprak, PR Selvin
    posted to review single_molecule by yusdi on 2008-04-05 15:18:23 as ****
  • Sorting single molecules: application to diagnostics and evolutionary biotechnology.
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 91, No. 13. (21 June 1994), pp. 5740-5747.
    by M Eigen, R Rigler
    posted to classic fcs single_molecule by yusdi on 2008-04-05 15:16:49 as ****
  • Structural dynamics and processing of nucleic acids revealed by single-molecule spectroscopy.
    Biochemistry, Vol. 43, No. 14. (13 April 2004), pp. 4055-4063.
    by T Ha
    posted to fret review single_molecule tirf by yusdi on 2008-04-05 15:15:56 as ****
  • Determination of thermodynamics and kinetics of RNA reactions by force.
    Quarterly reviews of biophysics, Vol. 39, No. 4. (November 2006), pp. 325-360.
    by I Tinoco, PT Li, C Bustamante
    posted to optical_trap single_molecule by yusdi on 2008-04-05 15:13:44 as ****
  • High-resolution, single-molecule measurements of biomolecular motion.
    Annu Rev Biophys Biomol Struct, Vol. 36 (2007), pp. 171-190.
    by WJ Greenleaf, MT Woodside, SM Block
    posted to optical_trap review single_molecule by yusdi on 2008-04-05 15:12:42 as **** along with 1 person choonpeng
  • Optical studies of single molecules at room temperature.
    Annual review of physical chemistry, Vol. 49 (1998), pp. 441-480.
    by XS Xie, JK Trautman
    posted to classic single_molecule by yusdi on 2008-04-05 15:11:28 as **
  • Fluorescence Spectroscopy of Single Biomolecules
    Science, Vol. 283, No. 5408. (12 March 1999), pp. 1676-1683.
    by Shimon Weiss
    posted to classic fret single_molecule by yusdi on 2008-04-05 15:07:24 as ** along with 2 people and 1 group FBerkemeier rodney Kopelman_Group
  • Illuminating Single Molecules in Condensed Matter
    Science, Vol. 283, No. 5408. (12 March 1999), pp. 1670-1676.
    by WE Moerner, Michel Orrit
    posted to classic fret single_molecule by yusdi on 2008-04-05 15:06:12 as read along with 1 person and 1 group samjlord moernerlab
  • Single-Molecule Techniques: A Laboratory Manual
    (2008)
    edited by Paul R Selvin, Takejip Ha
    posted to alex labelling review single_molecule tirf by yusdi on 2008-04-05 15:04:31 as **
  • Nonblinking and long-lasting single-molecule fluorescence imaging
    Nature Methods, Vol. 3, No. 11. (01 October 2006), pp. 891-893.
    by Ivan Rasnik, Sean A Mckinney, Taekjip Ha
    posted to single_molecule tirf by yusdi on 2008-04-01 15:55:37 as read along with 2 people and 1 group samjlord yanjiang moernerlab
  • Viewing dynamic assembly of molecular complexes by multi-wavelength single-molecule fluorescence.
    Biophys J, Vol. 91, No. 3. (1 August 2006), pp. 1023-1031.
    by LJ Friedman, J Chung, J Gelles
    posted to single_molecule tirf by yusdi on 2008-04-01 08:30:23 as ****
  • Sequence information can be obtained from single DNA molecules
    PNAS, Vol. 100, No. 7. (1 April 2003), pp. 3960-3964.
    by Ido Braslavsky, Benedict Hebert, Emil Kartalov, Stephen R Quake
    posted to dna_sequencing single_molecule tirf by yusdi on 2008-03-31 12:32:33 as **** along with 2 people austin akp
  • Nanofluidic structures for single biomolecule fluorescent detection
    Biopolymers, Vol. 85, No. 2. (2007), pp. 131-143.
    by JT Mannion, HG Craighead
    posted to fluidics single_molecule by yusdi on 2008-03-30 22:49:49 as ****
  • Increasing the Resolution of Single Pair Fluorescence Resonance Energy Transfer Measurements in Solution via Molecular Cytometry
    Anal. Chem., Vol. 79, No. 9. (1 May 2007), pp. 3509-3513.
    by JH Werner, ER Mccarney, RA Keller, KW Plaxco, PM Goodwin
    posted to single_molecule by yusdi on 2008-03-30 22:46:23 as read
  • Initiation and re-initiation of DNA unwinding by the Escherichia coli Rep helicase.
    Nature, Vol. 419, No. 6907. (10 October 2002), pp. 638-641.
    by T Ha, I Rasnik, W Cheng, HP Babcock, GH Gauss, TM Lohman, S Chu
    posted to classic single_molecule tirf by yusdi on 2008-03-30 22:36:51 as ****
  • Single-molecule fluorescence resonance energy transfer.
    Methods, Vol. 25, No. 1. (September 2001), pp. 78-86.
    by T Ha
    posted to review single_molecule tirf by yusdi on 2008-03-30 22:35:39 as read along with 2 people and 2 groups yanjiang rodney moernerlab Kopelman_Group
  • Single-molecule fluorescence resonance energy transfer in nanopipets: improving distance resolution and concentration range.
    Anal Chem, Vol. 79, No. 19. (1 October 2007), pp. 7367-7375.
    by J Vogelsang, S Doose, M Sauer, P Tinnefeld
    posted to alex single_molecule by yusdi on 2008-03-30 21:21:39 as read
  • Zero-mode waveguides for single-molecule analysis at high concentrations.
    Science, Vol. 299, No. 5607. (31 January 2003), pp. 682-686.
    by MJ Levene, J Korlach, SW Turner, M Foquet, HG Craighead, WW Webb
    posted to single_molecule by yusdi on 2008-03-30 21:17:25 as read along with 1 person melting
  • Pulsed interleaved excitation.
    Biophys J, Vol. 89, No. 5. (November 2005), pp. 3508-3522.
    by BK Müller, E Zaychikov, C Bräuchle, DC Lamb
    posted to single_molecule by yusdi on 2008-03-30 21:15:19 as ****
  • Repetitive shuttling of a motor protein on DNA
    Nature, Vol. 437, No. 7063. (2005), pp. 1321-1325.
    by Sua Myong, Ivan Rasnik, Chirlmin Joo, Timothy M Lohman, Taekjip Ha
    posted to single_molecule tirf by yusdi on 2008-03-30 21:03:58 as **** along with 1 person dayjm
  • Spring-Loaded Mechanism of DNA Unwinding by Hepatitis C Virus NS3 Helicase
    Science, Vol. 317, No. 5837. (27 July 2007), pp. 513-516.
    by Sua Myong, Michael M Bruno, Anna M Pyle, Taekjip Ha
    posted to single_molecule tirf by yusdi on 2008-03-30 20:56:07 as ** along with 1 person wduim
  • Real-Time Observation of RecA Filament Dynamics with Single Monomer Resolution
    Cell, Vol. 126, No. 3. (11 August 2006), pp. 515-527.
    by Chirlmin Joo, Sean A Mckinney, Muneaki Nakamura, Ivan Rasnik, Sua Myong, Taekjip Ha
    posted to single_molecule tirf by yusdi on 2008-03-30 20:51:34 as read
  • Total internal reflection fluorescence.
    Annu Rev Biophys Bioeng, Vol. 13 (1984), pp. 247-268.
    by D Axelrod, TP Burghardt, NL Thompson
    posted to classic single_molecule tirf by yusdi on 2008-03-30 20:41:34 as **** along with 1 person and 1 group cherrie CAOS
  • A single-molecule study of RNA catalysis and folding.
    Science, Vol. 288, No. 5473. (16 June 2000), pp. 2048-2051.
    by X Zhuang, LE Bartley, HP Babcock, R Russell, T Ha, D Herschlag, S Chu
    posted to single_molecule tirf by yusdi on 2008-03-30 20:26:40 as *****
  • Separating structural heterogeneities from stochastic variations in fluorescence resonance energy transfer distributions via photon distribution analysis.
    J Phys Chem B, Vol. 110, No. 13. (6 April 2006), pp. 6970-6978.
    by M Antonik, S Felekyan, A Gaiduk, CA Seidel
    posted to analysis single_molecule by yusdi on 2008-03-30 20:19:23 as ****
  • Shot-Noise Limited Single-Molecule FRET Histograms: Comparison between Theory and Experiments
    J. Phys. Chem. B, Vol. 110, No. 44. (9 November 2006), pp. 22103-22124.
    by E Nir, X Michalet, KM Hamadani, TA Laurence, D Neuhauser, Y Kovchegov, S Weiss
    posted to alex analysis simulation single_molecule by yusdi on 2008-03-30 20:16:12 as read along with 1 person seamus1089
  • Probing the interaction between two single molecules: Fluorescence resonance energy transfer between a single donor and a single acceptor
    PNAS, Vol. 93, No. 13. (25 June 1996), pp. 6264-6268.
    by T Ha, Th Enderle, DF Ogletree, DS Chemla, PR Selvin, S Weiss
    posted to classic fret single_molecule by yusdi on 2008-03-30 19:59:17 as ** along with 1 person FBerkemeier
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