yylin's library 76 articles Export

	Exploring the structure and function paradigm [My Copy] Current Opinion in Structural Biology In Nucleic acids / Sequences and topology, Vol. 18, No. 3. (June 2008), pp. 394-402. by O. Redfern, B. Dessailly, C. Orengo posted to structure by yylin on 2009-09-29 07:09:14 as along with 8 people and 1 group dfdong bdessailly robfsouza guhjy paulschlesinger marck chad_davis janasont Orengo Group Journal Picks
	Dynamic programming alignment accuracy [My Copy] In RECOMB '98: Proceedings of the second annual international conference on Computational molecular biology (1998), pp. 102-108. by Ian Holmes, Richard Durbin posted to homology alignment by yylin on 2009-09-21 08:41:25 as along with 1 person treangen
	Cascade PSI-BLAST web server: a remote homology search tool for relating protein domains [My Copy] Nucl. Acids Res., Vol. 34, No. suppl_2. (1 July 2006), pp. W143-146. by R. Bhadra, S. Sandhya, K. R. Abhinandan, S. Chakrabarti, R. Sowdhamini, N. Srinivasan posted to no-tag by yylin on 2009-07-17 09:15:36 as
	SVM-Fold: a tool for discriminative multi-class protein fold and superfamily recognition [My Copy] BMC Bioinformatics, Vol. 8, No. Suppl 4. (2007), S2. by Iain Melvin, Eugene Ie, Rui Kuang, Jason Weston, William Noble, Christina Leslie posted to no-tag by yylin on 2009-07-17 09:13:58 as along with 2 people druvus kallberg
	Sequence context-specific profiles for homology searching [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 10. (10 March 2009), pp. 3770-3775. by A. Biegert, J. Söding posted to no-tag by yylin on 2009-07-17 09:10:23 as along with 7 people ikirmitz TRHvidsten operon dakelley martainn phoenixzxl zwang
	Basic local alignment search tool. [My Copy] Journal of molecular biology, Vol. 215, No. 3. (5 October 1990), pp. 403-410. by S. F. Altschul, W. Gish, W. Miller, E. W. Myers, D. J. Lipman posted to no-tag by yylin on 2009-07-17 09:08:24 as along with 77 people and 6 groups VGreiff richter80 krapnik azazello rshe mtaschuk sjcockell niallhaslam djohnson thegoose humburg timhubbard pachorip n00c maria_hauser rpetrenko parnell esyoun APRegier idoerg Neeperando robert85 thegoose2 daforerog mcbla coela alessandroparini bertelsen Blackbeard florisbuijzen laurabailey treangen pwais mmartin tharris dmp camster davidng evaf dragonrez jwm jmeppley Ayest RMGraze ea yas balajis alexg indigoviolet moborg arcticrasta dullhunk dgront caporaso michC myui BioNica CitoJam rabio timflutre lusk cjeans incovoma beatrizfernandez wenhan jtomasch GustavoLacerda sgoetz siebertm ichbins81 jofiel Thaverkamp shung marti ashaytan benwei granujilla C. elegans / WormBase dbk-lab EisenLab T_lab biomedical-nlp Microbial-Ecology
	Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. [My Copy] Nucleic acids research, Vol. 25, No. 17. (1 September 1997), pp. 3389-3402. by S. F. Altschul, T. L. Madden, A. A. Schäffer, et al.J. Zhang, Z. Zhang, W. Miller, D. J. Lipman posted to no-tag by yylin on 2009-07-16 04:56:32 as along with 68 people and 5 groups rshe niallhaslam ucbcjbm timhubbard parnell tfuji maria_hauser jbhiatt mgomes BioNica idoerg pjcite swp09 kgutwin mcbla cpwardell johanviklund daforerog nlapalu sebk tjimenez shung pwais dakelley knaseanka setar iakes miguel kaarsinogen bjorns bicko jmeppley chad_davis balajis nuke2005 eweaver david_parsons indigoviolet dullhunk robert dgront happy_manatee caporaso treangen kengg manzanita CitoJam jdelcampo aengisch rabio massivemayhem mirzazadeh azazello sujaikumar beatrizfernandez GustavoLacerda siebertm adijr viktor21614 mijam grottenolm bandrewfox edvin newton1234 mariakmejia granujilla marti CharlesM References for 3DSim paper EisenLab biomedical-nlp Microbial-Ecology Plantandetc
	Clustering of highly homologous sequences to reduce the size of large protein databases. [My Copy] Bioinformatics (Oxford, England), Vol. 17, No. 3. (1 March 2001), pp. 282-283. by W. Li, L. Jaroszewski, A. Godzik posted to no-tag by yylin on 2009-07-16 04:56:12 as along with 4 people and 1 group maria_hauser TLVincent Cortel caporaso biomedical-nlp
	Consensus sequences improve PSI-BLAST through mimicking profile-profile alignments. [My Copy] Nucleic acids research, Vol. 35, No. 7. (1 April 2007), pp. 2238-2246. by Dariusz Przybylski, Burkhard Rost posted to homology sequence by yylin on 2009-07-16 04:55:50 as along with 1 person maria_hauser
	Powerful fusion: PSI-BLAST and consensus sequences [My Copy] Bioinformatics, Vol. 24, No. 18. (15 September 2008), pp. 1987-1993. by Dariusz Przybylski, Burkhard Rost posted to homology sequence by yylin on 2009-07-16 04:54:38 as along with 1 person marck
	Fast Statistical Alignment [My Copy] PLoS Comput Biol, Vol. 5, No. 5. (29 May 2009), e1000392. by Robert K. Bradley, Adam Roberts, Michael Smoot, et al.Sudeep Juvekar, Jaeyoung Do, Colin Dewey, Ian Holmes, Lior Pachter posted to no-tag by yylin on 2009-07-15 08:17:24 as along with 18 people and 1 group seb1 rdowell timflutre natstreet n00c aprasad Gorzomagnificent guhjy dakelley reyez rec3141 farhat operon bmduggan nuin AlexBateman djkt druvus Journal picks
	Detection of native-like models for amino acid sequences of unknown three-dimensional structure in a data base of known protein conformations. [My Copy] Proteins, Vol. 13, No. 3. (July 1992), pp. 258-271. by M. J. Sippl, S. Weitckus posted to no-tag by yylin on 2009-07-15 08:13:44 as
	Scoring functions in protein folding and design [My Copy] Protein Science, Vol. 9, No. 4. (April 2000), pp. 812-819. by Ruxandra I. Dima, Jayanth R. Banavar, Amos Maritan posted to no-tag by yylin on 2009-07-15 08:13:22 as along with 1 person paddydu
	Identification of related proteins with weak sequence identity using secondary structure information. [My Copy] Protein science : a publication of the Protein Society, Vol. 10, No. 4. (April 2001), pp. 788-797. by C. Geourjon, C. Combet, C. Blanchet, G. Deléage posted to no-tag by yylin on 2009-07-15 08:13:19 as
	Protein fold recognition by prediction-based threading1 [My Copy] Journal of Molecular Biology, Vol. 270, No. 3. (18 July 1997), pp. 471-480. by Burkhard Rost, Reinhard Schneider, Chris Sander posted to no-tag by yylin on 2009-07-15 08:11:49 as along with 1 person j3xucite
	Within the twilight zone: a sensitive profile-profile comparison tool based on information theory1 [My Copy] Journal of Molecular Biology, Vol. 315, No. 5. (01 February 2002), pp. 1257-1275. by Golan Yona, Michael Levitt posted to no-tag by yylin on 2009-07-15 08:11:34 as along with 2 people bluto dgront
	The WWWH of remote homolog detection: The state of the art [My Copy] Brief Bioinform, Vol. 8, No. 2. (1 March 2007), pp. 78-87. by Piero Fariselli, Ivan Rossi, Emidio Capriotti, Rita Casadio posted to no-tag by yylin on 2009-07-15 08:09:43 as along with 1 person dimka
	Automated detection of remote homology [My Copy] Current Opinion in Structural Biology, Vol. 12, No. 3. (1 June 2002), pp. 362-367. by S. Dietmann posted to homology sequence by yylin on 2009-07-15 08:07:41 as
	On the Evolution of Protein Folds: Are Similar Motifs in Different Protein Folds the Result of Convergence, Insertion, or Relics of an Ancient Peptide World? [My Copy] Journal of Structural Biology, Vol. 134, No. 2-3. (May 2001), pp. 191-203. by A. Lupas posted to homology sequence by yylin on 2009-07-15 08:06:33 as along with 2 people and 2 groups chad_davis marcius BioinfoCIPF SGU-CIPF
	The limits of protein sequence comparison? [My Copy] Current opinion in structural biology, Vol. 15, No. 3. (June 2005), pp. 254-260. by William R. Pearson, Michael L. Sierk posted to homology sequence by yylin on 2009-07-15 08:05:14 as along with 3 people and 1 group svozil richardbickerton BioNica Bioinformatics
	Simultaneous Solution of the RNA Folding, Alignment and Protosequence Problems [My Copy] SIAM Journal on Applied Mathematics, Vol. 45, No. 5. (1985), pp. 810-825. by David Sankoff posted to alignment bioinformatics rna sequence by yylin on 2009-02-15 06:56:08 as along with 1 person agrobledo
	Structural Alignment of Pseudoknotted RNA [My Copy] Journal of Computational Biology, Vol. 15, No. 5. (June 2008), pp. 489-504. by Buhm Han, Banu Dost, Vineet Bafna, Shaojie Zhang posted to no-tag by yylin on 2009-02-15 06:51:11 as
	Prediction of RNA secondary structure with pseudoknots using integer programming [My Copy] BMC Bioinformatics, Vol. 10, No. Suppl 1. (2009) by Unyanee Poolsap, Yuki Kato, Tatsuya Akutsu posted to no-tag by yylin on 2009-02-15 06:42:18 as
	BAliBASE (Benchmark Alignment dataBASE): enhancements for repeats, transmembrane sequences and circular permutations [My Copy] Nucl. Acids Res., Vol. 29, No. 1. (1 January 2001), pp. 323-326. by Anne Bahr, Julie D. Thompson, J. C. Thierry, Olivier Poch posted to no-tag by yylin on 2008-12-03 06:27:32 as
	A comprehensive comparison of multiple sequence alignment programs [My Copy] Nucl. Acids Res., Vol. 27, No. 13. (1 July 1999), pp. 2682-2690. by Jd Thompson, F. Plewniak, O. Poch posted to no-tag by yylin on 2008-12-03 06:25:35 as along with 1 person treangen
	DNA binding sites: representation and discovery. [My Copy] Bioinformatics (Oxford, England), Vol. 16, No. 1. (January 2000), pp. 16-23. by G. D. Stormo posted to no-tag by yylin on 2008-12-03 06:04:49 as along with 9 people and 1 group Stew emptyhb isimpson kaarsinogen mbj dquest lusk ezralanglois xili03 Bioinformatics - CRUK
	BAliBASE: a benchmark alignment database for the evaluation of multiple alignment programs [My Copy] Bioinformatics, Vol. 15, No. 1. (1 January 1999), pp. 87-88. by Jd Thompson, F. Plewniak, O. Poch posted to no-tag by yylin on 2008-12-03 05:59:53 as along with 3 people taguchi BioNica newton1234
	Multiple alignment of protein sequences with repeats and rearrangements [My Copy] Nucleic Acids Research, Vol. 34, No. 20. (November 2006), pp. 5932-5942. by Phuong, Tu Minh, Do, et al.B. Chuong, Edgar, C. Robert, Batzoglou, Serafim posted to no-tag by yylin on 2008-12-03 05:59:31 as along with 2 people treangen hpaces
	MUSCLE: multiple sequence alignment with high accuracy and high throughput [My Copy] Nucl. Acids Res., Vol. 32, No. 5. (19 March 2004), pp. 1792-1797. by Robert C. Edgar posted to no-tag by yylin on 2008-12-03 05:59:25 as along with 29 people and 2 groups mgomes jeargle tomjad foxpowa esyoun natstreet dquest BioNica gjuggler edvin treangen sebk agustinarce fhsantanna nachtalp bpb chrn jwm Haggan sanchezbuelna timflutre olympos martainn newton1234 skumagai bmaust sconlan dmp kcrawlik Radiation_Damage Stressosome
	Prediction of co-regulated genes in Bacillus subtilis on the basis of upstream elements conserved across three closely related species [My Copy] Genome Biology, Vol. 2, No. 11. (2001), pp. research0048.1-research0048.12. by Goro Terai, Toshihisa Takagi, Kenta Nakai posted to no-tag by yylin on 2008-12-03 05:59:07 as
	Identifying DNA and protein patterns with statistically significant alignments of multiple sequences [My Copy] Bioinformatics, Vol. 15, No. 7. (1 July 1999), pp. 563-577. by G. Z. Hertz, G. D. Stormo posted to no-tag by yylin on 2008-12-03 05:58:31 as along with 8 people and 1 group megraw tonamswish wowalz tuck indigoviolet dquest lusk chad_davis EisenLab
	YMF: a program for discovery of novel transcription factor binding sites by statistical overrepresentation [My Copy] Nucl. Acids Res., Vol. 31, No. 13. (1 July 2003), pp. 3586-3588. by Saurabh Sinha, Martin Tompa posted to no-tag by yylin on 2008-12-03 05:57:50 as along with 2 people Dulce wowalz
	Assessing computational tools for the discovery of transcription factor binding sites [My Copy] Nat Biotech, Vol. 23, No. 1. (06 January 2005), pp. 137-144. by Martin Tompa, Nan Li, Timothy L. Bailey, et al.George M. Church, Bart De Moor, Eleazar Eskin, Alexander V. Favorov, Martin C. Frith, Yutao Fu, W. James Kent, Vsevolod J. Makeev, Andrei A. Mironov, William S. Noble, Giulio Pavesi, Graziano Pesole, Mireille Regnier, Nicolas Simonis, Saurabh Sinha, Gert Thijs, Jacques van Helden, Mathias Vandenbogaert, Zhiping Weng, Christopher Workman, Chun Ye, Zhou Zhu posted to no-tag by yylin on 2008-12-03 05:57:29 as along with 38 people and 6 groups mpizbioinfo megraw Dulce farhat wowalz mhofree jasontsai heliopais pengchy daforerog cambray emptyhb bryankr icases ana barry aalibes aprasad jfr tuck chad_davis lyongu tabu dquest neveaire ranb johncumbers noano xiaobeizhao olympos GustavoLacerda nklee mdimon dandaman vietanh0 ep161302 nuin Stew structural_bioinformatics Biostatistics Computational-Genomics Bioinformatics Neuroscience TNT
	Is proteomics the new genomics? [My Copy] Cell, Vol. 130, No. 3. (10 August 2007), pp. 395-398. by Jürgen Cox, Matthias Mann posted to no-tag by yylin on 2008-10-29 06:12:39 as along with 7 people pekrau frohike grahamc fishtank oelemento Pao-Yang anwazo
	How Much Peptide Sequence Information Is Contained in Ion Trap Tandem Mass Spectra? [My Copy] Journal of the American Society for Mass Spectrometry (7 August 2008) by Jürgen Cox, Nina C C. Hubner, Matthias Mann posted to no-tag by yylin on 2008-10-29 06:11:17 as along with 3 people guhjy nedwards brianb
	Sequence Comparison: Theory and Methods (Computational Biology) [My Copy] by Kun-Mao Chao, Louxin Zhang posted to no-tag by yylin on 2008-07-30 08:25:12 as
	Improved Approximation Algorithms for the Spanning Star Forest Problem [My Copy] Approximation, Randomization, and Combinatorial Optimization. Algorithms and Techniques (2007), pp. 44-58. by Ning Chen, Roee Engelberg, C. Nguyen, Prasad Raghavendra, Atri Rudra, Gyanit Singh posted to no-tag by yylin on 2008-07-30 04:27:10 as
	A General Approximation Technique for Constrained Forest Problems [My Copy] SIAM J. Comput., Vol. 24, No. 2. (April 1995), pp. 296-317. by Michel X. Goemans, David P. Williamson posted to no-tag by yylin on 2008-07-30 04:26:59 as
	A threshold of ln <italic>n</italic> for approximating set cover [My Copy] J. ACM, Vol. 45, No. 4. (July 1998), pp. 634-652. by Uriel Feige posted to no-tag by yylin on 2008-06-25 15:44:26 as along with 1 person and 1 group condon beta
	Optimization, approximation, and complexity classes [My Copy] In STOC '88: Proceedings of the twentieth annual ACM symposium on Theory of computing (1988), pp. 229-234. by Christos Papadimitriou, Mihalis Yannakakis posted to no-tag by yylin on 2008-06-25 15:42:08 as along with 2 people BarrosH gane5h
	Theorie der endlichen und unendlichen Graphen [My Copy] Monatshefte für Mathematik, Vol. 46, No. 1. (1 December 1937), pp. A17-A18. by L. Vietoris posted to no-tag by yylin on 2008-06-24 05:26:44 as
	Complexity of approximating bounded variants of optimization problems [My Copy] Theoretical Computer Science In Foundations of Computation Theory (FCT 2003), Vol. 354, No. 3. (4 April 2006), pp. 320-338. by Miroslav Chlebík, Janka Chlebíková posted to no-tag by yylin on 2008-06-23 20:07:25 as
	Paths, Stars and the Number Three [My Copy] Combinatorics, Probability & Computing, Vol. 5 (1996), pp. 277-295. by Bruce A. Reed posted to no-tag by yylin on 2008-06-20 02:57:36 as
	Domination in graphs with minimum degree two [My Copy] Journal of Graph Theory, Vol. 13, No. 6. (1989), pp. 749-762. by William Mccuaig, Bruce Shepherd posted to no-tag by yylin on 2008-06-19 18:19:26 as
	Domination in Graphs (Pure and Applied Mathematics) [My Copy] (05 January 1998) by Teresa W. Haynes, Stephen Hedetniemi, Peter Slater posted to no-tag by yylin on 2008-06-18 10:03:54 as
	Fundamentals of Domination in Graphs (Pure and Applied Mathematics (Marcel Dekker)) [My Copy] (05 January 1998) by Teresa W. Haynes, Stephen Hedetniemi, Peter Slater posted to no-tag by yylin on 2008-06-18 10:03:23 as along with 1 person bigbossman
	Improved lower bounds on k-independence [My Copy] J. Graph Theory, Vol. 15, No. 1. (March 1991), pp. 99-107. by Yair Caro, Zsolt Tuza posted to no-tag by yylin on 2008-06-17 08:01:11 as
	On Dominating Sets and Independent Sets of Graphs [My Copy] Combinatorics, Probability and Computing, Vol. 8, No. 06. (2000), pp. 547-553. by Jochen Harant, A. N. J. A. Pruchnewski, Margit Voigt posted to no-tag by yylin on 2008-06-17 07:56:00 as
	Approximating the spanning star forest problem and its applications to genomic sequence alignment [My Copy] In SODA '07: Proceedings of the eighteenth annual ACM-SIAM symposium on Discrete algorithms (2007), pp. 645-654. by Thach C. Nguyen, Jian Shen, Minmei Hou, Li Sheng, Webb Miller, Louxin Zhang posted to no-tag by yylin on 2008-06-12 00:15:01 as
	On the complexity of multiple sequence alignment. [My Copy] Journal of computational biology : a journal of computational molecular cell biology, Vol. 1, No. 4. (1994), pp. 337-348. by L. Wang, T. Jiang posted to no-tag by yylin on 2008-06-12 00:11:39 as along with 5 people bertelsen Lombardo_7 sebk treangen newton1234