ziquje's library 68 articles Export

	Functional genomics and proteomics--the role of nuclear medicine. [My Copy] Eur J Nucl Med Mol Imaging, Vol. 29, No. 1. (January 2002), pp. 115-132. by U. Haberkorn, A. Altmann, M. Eisenhut posted to bioinformatics by ziquje on 2005-08-18 19:10:45 as
	Bioinformatics and genomic medicine. [My Copy] Genet Med, Vol. 4, No. 6 Suppl. (c 2002) by J. H. Kim posted to bioinformatics by ziquje on 2005-08-18 19:08:59 as
	Overview of commonly used bioinformatics methods and their applications. [My Copy] Ann N Y Acad Sci, Vol. 1020 (May 2004), pp. 10-21. by I. M. Kapetanovic, S. Rosenfeld, G. Izmirlian posted to bioinformatics methods by ziquje on 2005-05-26 19:27:34 as along with 2 people flbarroso guhjy
	Phylogenomic inference of protein molecular function: advances and challenges. [My Copy] Bioinformatics, Vol. 20, No. 2. (22 January 2004), pp. 170-179. by K. Sjölander posted to phylogenetics by ziquje on 2005-05-18 22:47:30 as along with 4 people operon jwortman sriram_s sgoetz
	Multiple Sequence Alignment in Phylogenetic Analysis [My Copy] Molecular Phylogenetics and Evolution, Vol. 16, No. 3. (September 2000), pp. 317-330. by A. Phillips posted to alignments and homology pairwise by ziquje on 2005-05-16 16:50:18 as along with 4 people operon nuin aprasad stormybriggs
	DNA sequence analysis linguistic tools: contrast vocabularies, compositional spectra and linguistic complexity. [My Copy] Appl Bioinformatics, Vol. 2, No. 2. (2003), pp. 103-112. by A. Bolshoy posted to analysis linguistics sequence by ziquje on 2005-05-16 16:48:06 as
	Bioinformatics for the 'bench biologist': how to find regulatory regions in genomic DNA [My Copy] Nature Immunology, Vol. 5, No. 8. (01 August 2004), pp. 768-774. by Julie Nardone, Dong U. Lee, K. Mark Ansel, Anjana Rao posted to regulatory sites transcription by ziquje on 2005-05-16 16:47:24 as along with 5 people nklee idonaldson moborg kianpeng Jporci
	Where did the BLOSUM62 alignment score matrix come from? [My Copy] Nature biotechnology, Vol. 22, No. 8. (August 2004), pp. 1035-1036. by Sean R. Eddy posted to blosum62 scoring-matrices by ziquje on 2005-05-16 16:45:59 as along with 7 people and 1 group svozil mcbla bicko gurkanbebek xiaobeizhao rabio reyez Bioinformatics
	Moment-based prediction of DNA-binding proteins. [My Copy] J Mol Biol, Vol. 341, No. 1. (30 July 2004), pp. 65-71. by S. Ahmad, A. Sarai posted to interactions protein-dna by ziquje on 2005-05-16 16:45:05 as along with 1 person kaarsinogen
	Analytical approaches to genomic evolution. [My Copy] Biochimie, Vol. 75, No. 5. (1993), pp. 409-413. by D. Sankoff posted to genome-evolution by ziquje on 2005-05-16 16:43:43 as
	Simulations of nucleic acids and their complexes. [My Copy] Acc Chem Res, Vol. 35, No. 6. (June 2002), pp. 350-357. by E. Giudice, R. Lavery posted to interactions protein-dna by ziquje on 2005-05-16 16:40:30 as along with 2 people ffranca xingyuan
	Finding prostate cancer susceptibility genes. [My Copy] Annu Rev Genomics Hum Genet, Vol. 5 (2004), pp. 151-175. by E. A. Ostrander, K. Markianos, J. L. Stanford posted to cancer prostate by ziquje on 2005-05-10 22:50:45 as
	A Bayesian network approach to operon prediction. [My Copy] Bioinformatics, Vol. 19, No. 10. (1 July 2003), pp. 1227-1235. by J. Bockhorst, M. Craven, D. Page, J. Shavlik, J. Glasner posted to operon-prediction by ziquje on 2005-05-09 21:47:50 as along with 2 people coela kaarsinogen
	Operon prediction by comparative genomics: an application to the Synechococcus sp. WH8102 genome. [My Copy] Nucleic Acids Res, Vol. 32, No. 7. (2004), pp. 2147-2157. by X. Chen, Z. Su, P. Dam, B. Palenik, Y. Xu, T. Jiang posted to operon-prediction by ziquje on 2005-05-09 21:47:21 as along with 2 people kaarsinogen msuarezdiez
	Operons in Escherichia coli: genomic analyses and predictions. [My Copy] Proc Natl Acad Sci U S A, Vol. 97, No. 12. (6 June 2000), pp. 6652-6657. by H. Salgado, G. Moreno-Hagelsieb, T. F. Smith, J. Collado-Vides posted to operon-prediction by ziquje on 2005-05-09 21:46:45 as along with 4 people nikkiwithers pkm kaarsinogen vladimirov
	Computer analysis of transcription regulatory patterns in completely sequenced bacterial genomes. [My Copy] Nucleic Acids Res, Vol. 27, No. 14. (15 July 1999), pp. 2981-2989. by A. A. Mironov, E. V. Koonin, M. A. Roytberg, M. S. Gelfand posted to evolution homology orthology paralogy transcription by ziquje on 2005-05-09 21:40:22 as along with 1 person kaarsinogen
	The balance of driving forces during genome evolution in prokaryotes. [My Copy] Genome Res, Vol. 13, No. 7. (July 2003), pp. 1589-1594. by V. Kunin, C. A. Ouzounis posted to evolution homology orthology paralogy by ziquje on 2005-05-09 21:33:35 as along with 2 people kaarsinogen evodeva
	Genome sequence comparison and scenarios for gene rearrangements: a test case. [My Copy] Genomics, Vol. 30, No. 2. (20 November 1995), pp. 299-311. by S. Hannenhalli, C. Chappey, E. V. Koonin, P. A. Pevzner posted to evolution homology orthology paralogy by ziquje on 2005-05-09 20:55:09 as
	Comparing bacterial genomes through conservation profiles. [My Copy] Genome Res, Vol. 13, No. 5. (May 2003), pp. 991-998. by M. J. Martin, J. Herrero, A. Mateos, J. Dopazo posted to evolution homology orthology paralogy by ziquje on 2005-05-09 20:55:00 as
	Beyond complete genomes: from sequence to structure and function. [My Copy] Curr Opin Struct Biol, Vol. 8, No. 3. (June 1998), pp. 355-363. by E. V. Koonin, R. L. Tatusov, M. Y. Galperin posted to evolution homology orthology paralogy by ziquje on 2005-05-09 20:54:52 as along with 1 person cgaugain
	Evolutionary analysis by whole-genome comparisons. [My Copy] J Bacteriol, Vol. 184, No. 8. (April 2002), pp. 2260-2272. by A. K. Bansal, T. E. Meyer posted to evolution homology orthology paralogy by ziquje on 2005-05-09 20:54:43 as along with 1 person bayesian
	Rapid genome evolution revealed by comparative sequence analysis of orthologous regions from four triticeae genomes. [My Copy] Plant Physiol, Vol. 135, No. 1. (May 2004), pp. 459-470. by Y. Q. Gu, D. Coleman-Derr, X. Kong, O. D. Anderson posted to evolution homology orthology paralogy by ziquje on 2005-05-09 20:54:35 as
	Comprehensive comparison between locations of orthologous genes on archaeal and bacterial genomes. [My Copy] Bioinformatics, Vol. 17, No. 9. (September 2001), pp. 791-802. by K. Horimoto, S. Fukuchi, K. Mori posted to evolution homology orthology paralogy by ziquje on 2005-05-09 20:54:22 as
	Genome alignment, evolution of prokaryotic genome organization, and prediction of gene function using genomic context. [My Copy] Genome Res, Vol. 11, No. 3. (March 2001), pp. 356-372. by Y. I. Wolf, I. B. Rogozin, A. S. Kondrashov, E. V. Koonin posted to evolution homology orthology paralogy by ziquje on 2005-05-09 20:51:56 as along with 2 people and 2 groups barry eweaver structural_bioinformatics Bioinformatics
	Measuring genome evolution. [My Copy] Proc Natl Acad Sci U S A, Vol. 95, No. 11. (26 May 1998), pp. 5849-5856. by M. A. Huynen, P. Bork posted to evolution homology orthology paralogy by ziquje on 2005-05-09 20:38:11 as along with 4 people greger_halltorp operon kaarsinogen ruvido
	Multiple structural alignment by secondary structures: algorithm and applications. [My Copy] Protein Sci, Vol. 12, No. 11. (November 2003), pp. 2492-2507. by O. Dror, H. Benyamini, R. Nussinov, H. J. Wolfson posted to bioinformatics modeling molecular by ziquje on 2005-02-23 16:18:08 as along with 2 people dimka analogAI
	On ontologies for biologists: the Gene Ontology--untangling the web. [My Copy] Novartis Found Symp, Vol. 247 (2002) by M. Ashburner, S. Lewis posted to bioinformatics gene-ontology by ziquje on 2005-02-22 16:33:38 as along with 2 people kshameer skhadar
	A probabilistic view of gene function. [My Copy] Nat Genet, Vol. 36, No. 6. (June 2004), pp. 559-564. by A. G. Fraser, E. M. Marcotte posted to bioinformatics gene-function by ziquje on 2005-02-22 16:32:00 as along with 10 people and 1 group bertelsen snuppepuppan lfriedl opheliav wnpx samal grahamc massivemayhem bootsy vietanh0 kdl
	A multiple alignment algorithm for metabolic pathway analysis using enzyme hierarchy. [My Copy] Proc Int Conf Intell Syst Mol Biol, Vol. 8 (2000), pp. 376-383. by Y. Tohsato, H. Matsuda, A. Hashimoto posted to bioinformatics metabolics by ziquje on 2005-02-22 16:27:22 as along with 3 people calvin dragonrez nuke2005
	The gene ontology categorizer. [My Copy] Bioinformatics, Vol. 20 Suppl 1 (4 August 2004) by C. A. Joslyn, S. M. Mniszewski, A. Fulmer, G. Heaton posted to bioinformatics gene-ontology by ziquje on 2005-02-22 16:25:36 as along with 2 people bertelsen cmzmasek
	EzCatDB: the Enzyme Catalytic-mechanism Database. [My Copy] Nucleic acids research, Vol. 33, No. Database issue. (1 January 2005) by N. Nagano posted to bioinformatics enzyme by ziquje on 2005-02-22 16:22:09 as along with 5 people grottenolm eweaver tny Jporci sim82
	The ENZYME data bank. [My Copy] Nucleic Acids Res, Vol. 22, No. 17. (September 1994), pp. 3626-3627. by A. Bairoch posted to bioinformatics enzyme-nomenclature by ziquje on 2005-02-22 16:20:31 as along with 2 people flbarroso jdiezperezj
	PromH: Promoters identification using orthologous genomic sequences. [My Copy] Nucleic Acids Res, Vol. 31, No. 13. (1 July 2003), pp. 3540-3545. by V. V. Solovyev, I. A. Shahmuradov posted to bioinformatics promoter-prediction by ziquje on 2005-02-17 18:19:45 as
	Tools and resources for identifying protein families, domains and motifs. [My Copy] Genome Biol, Vol. 3, No. 1. (2002) by N. J. Mulder, R. Apweiler posted to bioinformatics protein-annotation by ziquje on 2005-02-17 18:18:39 as
	A novel method for prokaryotic promoter prediction based on DNA stability. [My Copy] BMC Bioinformatics, Vol. 6, No. 1. (5 January 2005) by A. Kanhere, M. Bansal posted to bioinformatics promoter-prediction by ziquje on 2005-02-17 18:17:27 as along with 1 person lptolik
	Prediction of prokaryotic promoters based on prediction of transcriptional units. [My Copy] Sheng Wu Hua Xue Yu Sheng Wu Wu Li Xue Bao (Shanghai), Vol. 35, No. 4. (April 2003), pp. 317-324. by J. C. Lin, J. L. Xu, J. H. Luo, Y. X. Li posted to bioinformatics promoter-prediction by ziquje on 2005-02-17 18:16:26 as
	ExPASy: The proteomics server for in-depth protein knowledge and analysis. [My Copy] Nucleic Acids Res, Vol. 31, No. 13. (1 July 2003), pp. 3784-3788. by E. Gasteiger, A. Gattiker, C. Hoogland, I. Ivanyi, R. D. Appel, A. Bairoch posted to bioinformatics by ziquje on 2005-02-17 18:14:37 as along with 3 people and 2 groups irenas grottenolm fgibson dbk-lab GelML
	University bioinformatics programs on the rise. [My Copy] Nat Biotechnol, Vol. 19, No. 3. (March 2001), pp. 285-286. by R. J. Zauhar posted to bioinformatics bioinformatics-curriculum by ziquje on 2005-02-17 18:11:57 as along with 2 people kekib numata
	Single nucleotide polymorphisms (SNPs) that map to gaps in the human SNP map. [My Copy] Nucleic Acids Res, Vol. 31, No. 16. (15 August 2003), pp. 4910-4916. by C. Tsui, L. E. Coleman, J. L. Griffith, et al.E. A. Bennett, S. G. Goodson, J. D. Scott, W. S. Pittard, S. E. Devine posted to bioinformatics snps by ziquje on 2005-02-17 18:07:24 as
	Advantages and limitations of microarray technology in human cancer. [My Copy] Oncogene, Vol. 22, No. 42. (29 September 2003), pp. 6497-6507. by G. Russo, C. Zegar, A. Giordano posted to bioinformatics microarray by ziquje on 2005-02-17 17:42:08 as
	Candidate gene approach for pharmacogenetic studies. [My Copy] Pharmacogenomics, Vol. 3, No. 1. (January 2002), pp. 47-56. by H. Z. Ring, D. L. Kroetz posted to bioinformatics pharmacogenetics by ziquje on 2005-02-17 17:39:20 as along with 1 person aldenor
	Experiments using microarray technology: limitations and standard operating procedures. [My Copy] J Endocrinol, Vol. 178, No. 2. (August 2003), pp. 195-204. by T. Forster, D. Roy, P. Ghazal posted to bioinformatics microarray by ziquje on 2005-02-17 17:36:03 as
	Gene selection in microarray data: the elephant, the blind men and our algorithms. [My Copy] Curr Opin Struct Biol, Vol. 13, No. 3. (June 2003), pp. 370-376. by G. Stolovitzky posted to bioinformatics microarray by ziquje on 2005-02-17 17:35:40 as
	Post-analysis follow-up and validation of microarray experiments. [My Copy] Nat Genet, Vol. 32 Suppl (December 2002), pp. 509-514. by R. F. Chuaqui, R. F. Bonner, C. J. Best, et al.J. W. Gillespie, M. J. Flaig, S. M. Hewitt, J. L. Phillips, D. B. Krizman, M. A. Tangrea, M. Ahram, W. M. Linehan, V. Knezevic, M. R. Emmert-Buck posted to bioinformatics microarray by ziquje on 2005-02-17 17:33:58 as along with 3 people and 1 group mayercd irenas stsaft dbk-lab
	Diagnostic and prognostic prediction using gene expression profiles in high-dimensional microarray data. [My Copy] Br J Cancer, Vol. 89, No. 9. (3 November 2003), pp. 1599-1604. by R. Simon posted to bioinformatics microarray by ziquje on 2005-02-17 17:33:23 as along with 1 person akastrin
	Navigating gene expression using microarrays [mdash] a technology review [My Copy] Nat Cell Biol, Vol. 3, No. 8. (August 2001), pp. E190-E195. by Almut Schulze, Julian Downward posted to bioinformatics microarray by ziquje on 2005-02-17 17:32:23 as along with 8 people and 2 groups kentz numata alokm balicea dchughes jo_davies ale mcox G4ID Genetics-of-Gambling
	The use and analysis of microarray data. [My Copy] Nat Rev Drug Discov, Vol. 1, No. 12. (December 2002), pp. 951-960. by A. Butte posted to bioinformatics microarray by ziquje on 2005-02-17 17:31:26 as along with 5 people and 1 group bertelsen daforerog irenas numata balicea dbk-lab
	Microbial gene identification using interpolated Markov models [My Copy] Nucl. Acids Res., Vol. 26, No. 2. (15 January 1998), pp. 544-548. by S. L. Salzberg, A. L. Delcher, S. Kasif, O. White posted to bioinformatics gene-identification imm by ziquje on 2005-02-14 17:49:32 as along with 7 people and 1 group tfuji Ayest gg bnchakraborty bluto jguinney wenhan MBLAB
	tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. [My Copy] Nucleic acids research, Vol. 25, No. 5. (1 March 1997), pp. 955-964. by T. M. Lowe, S. R. Eddy posted to bioinformatics rna-prediction by ziquje on 2005-02-14 17:47:45 as along with 12 people and 1 group azazello codonusage tfuji danatcaret gdb evaf arcticrasta dquest vwchan djkt dandaman timflutre beta
	The PROSITE database, its status in 2002. [My Copy] Nucleic Acids Res, Vol. 30, No. 1. (1 January 2002), pp. 235-238. by L. Falquet, M. Pagni, P. Bucher, et al.N. Hulo, C. J. Sigrist, K. Hofmann, A. Bairoch posted to bioinformatics protein-motif by ziquje on 2005-02-14 17:46:42 as along with 2 people and 1 group irenas Cortel dbk-lab

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bioinformatics	45
homology	11
evolution	10
orthology	10
paralogy	10
microarray	7
operon-prediction	4
gene-ontology	3
promoter-prediction	3
protein-motif	3
interactions	2
pfam	2
protein-dna	2
protein-family	2
re-annotation	2
transcription	2
alignments	1
analysis	1
and	1
annotation	1
automated-annotation	1
bioinformatics-curriculum	1
blast	1
blosum62	1
cancer	1
data-mining	1
enzyme	1
enzyme-nomenclature	1
gene-function	1
gene-identification	1
gene-prediction	1
genome-analysis	1
genome-annotation	1
genome-evolution	1
genome-wide	1
genomics	1
imm	1
linguistics	1
metabolics	1
methods	1
modeling	1
molecular	1
molecular-modeling	1
pairwise	1
pharmacogenetics	1
phylogenetics	1
profile-hmm	1
prostate	1
protein-annotation	1
protein-database	1
regulatory	1
rna-prediction	1
scoring-matrices	1
sequence	1
sequence-similarity-searching	1
sites	1
snps	1
tigrfams	1

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