zufar's library 735 articles Export

	CLEAN: CLustering Enrichment ANalysis [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (29 July 2009), 234. by Johannes Freudenberg, Vineet Joshi, Zhen Hu, Mario Medvedovic posted to gene_expression by zufar on 2009-11-20 18:17:04 as along with 9 people brianb nuin rdiaz dswan guhjy frohike RamuAnandakrishnan barriot renatomilani
	Automated multidimensional phenotypic profiling using large public microarray repositories. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 106, No. 30. (28 July 2009), pp. 12323-12328. by Min Xu, Wenyuan Li, Gareth M. James, Michael R. Mehan, Xianghong Jasmine J. Zhou posted to gene_expression_patterns by zufar on 2009-11-20 18:13:28 as along with 8 people tmmurali giovanni Borelli rdiaz guhjy TRHvidsten yaredo ptrobajo
	A modular approach for integrative analysis of large-scale gene-expression and drug-response data [My Copy] Nat Biotech, Vol. 26, No. 5. (08 May 2008), pp. 531-539. by Zoltan Kutalik, Jacques S. Beckmann, Sven Bergmann posted to gene_expression by zufar on 2009-11-20 18:13:00 as along with 10 people TRHvidsten vingron mingzhi guhjy aviad_work jfr stringertheory tmmurali oelemento ptrobajo
	MicroRNAs: Novel regulators in the hallmarks of human cancer [My Copy] Cancer Letters (22 May 2009) by Kai Ruan, Xiaoguang Fang, Gaoliang Ouyang posted to mirna by zufar on 2009-11-17 18:41:32 as along with 2 people and 1 group jfr guhjy microRNA
	Ki67 index, HER2 status, and prognosis of patients with luminal B breast cancer. [My Copy] Journal of the National Cancer Institute, Vol. 101, No. 10. (20 May 2009), pp. 736-750. by Maggie C. Cheang, Stephen K. Chia, David Voduc, et al.Dongxia Gao, Samuel Leung, Jacqueline Snider, Mark Watson, Sherri Davies, Philip S. Bernard, Joel S. Parker, Charles M. Perou, Matthew J. Ellis, Torsten O. Nielsen posted to breast_cancer by zufar on 2009-11-16 17:34:32 as along with 1 person jfr
	A general modular framework for gene set enrichment analysis [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (03 February 2009), 47. by Marit Ackermann, Korbinian Strimmer posted to no-tag by zufar on 2009-11-15 20:56:55 as along with 17 people and 1 group ptrobajo srp33 vingron dipenps shikin arjun_citeulike guhjy pk506 aviad_work thomaskelder ydhwang rdiaz kshameer renatomilani dswan cmzmasek RamuAnandakrishnan Bioinformatics
	A rapid method for microarray cross platform comparisons using gene expression signatures☆ [My Copy] Molecular and Cellular Probes, Vol. 21, No. 1. (10 February 2007), pp. 35-46. by Chris Cheadle, Kevin G. Becker, Yoon S. Cho-Chung, et al.Maria Nesterova, Tonya Watkins, William Wood III, Vinayakumar Prabhu, Kathleen C. Barnes posted to check_gsea by zufar on 2009-11-12 22:43:04 as along with 6 people and 2 groups heliopais guhjy jfr neveaire ealloza jdiggans microRNA BioinfoCIPF
	Gene Vector Analysis (Geneva): A unified method to detect differentially-regulated gene sets and similar microarray experiments [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008), 348. by Stephen Tanner, Pankaj Agarwal posted to gsea by zufar on 2009-11-12 22:33:00 as along with 6 people mingzhi frohike jfr mitko GeeSharpMinor guhjy
	An empirical Bayesian approach for model-based inference of cellular signaling networks [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 371. by David Klinke posted to bayesian_approach by zufar on 2009-11-12 17:10:38 as along with 4 people karthikraman tonamswish cmzmasek renatomilani
	Predicting new molecular targets for known drugs [My Copy] Nature, Vol. 462, No. 7270. (01 November 2009), pp. 175-181. by Michael J. Keiser, Vincent Setola, John J. Irwin, et al.Christian Laggner, Atheir I. Abbas, Sandra J. Hufeisen, Niels H. Jensen, Michael B. Kuijer, Roberto C. Matos, Thuy B. Tran, Ryan Whaley, Richard A. Glennon, Jerome Hert, Kelan L. H. Thomas, Douglas D. Edwards, Brian K. Shoichet, Bryan L. Roth posted to drug_target by zufar on 2009-11-12 15:23:13 as along with 14 people and 1 group venancio okapi ahmetbakan pablocarb zwang TRHvidsten phoenixzxl qshao Yanno mnishimu tmmurali sjcockell seb1 abhishek_tiwari Journal picks
	Discovering statistically significant pathways in expression profiling studies. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 102, No. 38. (20 September 2005), pp. 13544-13549. by Lu Tian, Steven A. Greenberg, Sek Won W. Kong, Josiah Altschuler, Isaac S. Kohane, Peter J. Park posted to gsea by zufar on 2009-11-12 13:41:32 as along with 12 people and 1 group yaredo VGreiff daforerog ipark-kaist dragonrez maryee ealloza frohike justescaped srp33 giovenko heliopais BioinfoCIPF
	Geometric interpretation of gene coexpression network analysis. [My Copy] PLoS computational biology, Vol. 4, No. 8. (15 August 2008), e1000117. by Steve Horvath, Jun Dong posted to expression_networks by zufar on 2009-11-12 13:39:19 as along with 22 people jeremymiller dolchan sficklin isimpson rdiaz guhjy cswinburne jfr ptrobajo pengchy nolodie druvus aramesh2 kengg roys Ema tmmurali Borelli Totobox AbnerCYH davidchavalarias caseybrown
	How to infer gene networks from expression profiles [My Copy] Molecular Systems Biology, Vol. 3 (13 February 2007) by Mukesh Bansal, Vincenzo Belcastro, Alberto Ambesi-Impiombato, Diego di Bernardo posted to expression_networks by zufar on 2009-11-12 13:38:22 as along with 37 people and 3 groups beete tonamswish nicholasflann icq242500260 guhjy Zephyrus antonkratz phoenixzxl bertelsen isimpson daforerog poirel agonzale roys Neeperando APRegier rdiaz klo Borelli ggallone ptrobajo druvus cswinburne jfr eckart_bindewald wnpx nickluscombe kengg mikaelhuss jrbanga BIBLIOma RockHI lp2 natstreet heliopais mariakmejia tmmurali Jarman Lab EBI-regulation Plantandetc
	Subclass Mapping: Identifying Common Subtypes in Independent Disease Data Sets [My Copy] PLoS ONE, Vol. 2, No. 11. (21 November 2007), e1195. by Yujin Hoshida, Jean-Philippe Brunet, Pablo Tamayo, Todd R. Golub, Jill P. Mesirov posted to breast_cancer by zufar on 2009-11-12 12:42:27 as along with 3 people aviad_work laral jfr
	Modularity and interactions in the genetics of gene expression [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 16. (21 April 2009), pp. 6441-6446. by Oren Litvin, Helen C. Causton, Bo-Juen Chen, Dana Pe'er posted to eqtl by zufar on 2009-11-10 18:08:58 as along with 13 people frohike guhjy dipenps coela Scis0000002 alweber daforerog TRHvidsten trfield deanmalmgren shikin provero roys
	Analyzing gene expression data in terms of gene sets: methodological issues [My Copy] Bioinformatics, Vol. 23, No. 8. (15 April 2007), pp. 980-987. by Jelle J. Goeman, Peter Buhlmann posted to gsea by zufar on 2009-11-10 17:20:06 as along with 19 people and 3 groups hzoltan srp33 bertelsen jperkins ptrobajo VGreiff tonamswish ipark-kaist aramesh2 ydhwang shikin raiyar ghattem jfr ealloza shigepong heliopais guhjy diging_data SIMR bioinformatics BioinfoCIPF BTS-PT-AS-CS
	The Connectivity Map: Using Gene-Expression Signatures to Connect Small Molecules, Genes, and Disease [My Copy] Science, Vol. 313, No. 5795. (29 September 2006), pp. 1929-1935. by Justin Lamb, Emily D. Crawford, David Peck, et al.Joshua W. Modell, Irene C. Blat, Matthew J. Wrobel, Jim Lerner, Jean-Philippe Brunet, Aravind Subramanian, Kenneth N. Ross, Michael Reich, Haley Hieronymus, Guo Wei, Scott A. Armstrong, Stephen J. Haggarty, Paul A. Clemons, Ru Wei, Steven A. Carr, Eric S. Lander, Todd R. Golub posted to cmap by zufar on 2009-11-09 17:01:01 as along with 29 people and 9 groups gbloeb ipark-kaist bertelsen mingzhi AbnerCYH Dulcinea dansullivanblk BragilMassoud guhjy kuhn jfr yas balajis marcius lhonigberg neveaire kengg ealloza koller mlovell jdiggans ezra jeremymiller frohike massivemayhem lp2 pablomendes jdiezperezj askrajiv Biostatistics Computational-Genomics Bioinformatics Neuroscience T_lab BioinfoCIPF SGU-CIPF GeschwindLab Plantandetc
	Moderated effect size and P-value combinations for microarray meta-analyses [My Copy] Bioinformatics, Vol. 25, No. 20. (15 October 2009), pp. 2692-2699. by Guillemette Marot, Jean-Louis Foulley, Claus-Dieter Mayer, Florence Jaffrezic posted to meta-analysis by zufar on 2009-11-08 19:54:39 as along with 6 people shikin dswan renatomilani rdiaz nuin daforerog
	Human Genome Sequencing Using Unchained Base Reads on Self-Assembling DNA Nanoarrays [My Copy] Science (5 November 2009), 1181498. by Radoje Drmanac, Andrew B. Sparks, Matthew J. Callow, et al.Aaron L. Halpern, Norman L. Burns, Bahram G. Kermani, Paolo Carnevali, Igor Nazarenko, Geoffrey B. Nilsen, George Yeung, Fredrik Dahl, Andres Fernandez, Bryan Staker, Krishna P. Pant, Jonathan Baccash, Adam P. Borcherding, Anushka Brownley, Ryan Cedeno, Linsu Chen, Dan Chernikoff, Alex Cheung, Razvan Chirita, Benjamin Curson, Jessica C. Ebert, Coleen R. Hacker, Robert Hartlage, Brian Hauser, Steve Huang, Yuan Jiang, Vitali Karpinchyk, Mark Koenig, Calvin Kong, Tom Landers, Catherine Le, Jia Liu, Celeste E. McBride, Matt Morenzoni, Robert E. Morey, Karl Mutch, Helena Perazich, Kimberly Perry, Brock A. Peters, Joe Peterson, Charit L. Pethiyagoda, Kaliprasad Pothuraju, Claudia Richter, Abraham M. Rosenbaum, Shaunak Roy, Jay Shafto, Uladzislau Sharanhovich, Karen W. Shannon, Conrad G. Sheppy, Michel Sun, Joseph V. Thakuria, Anne Tran, Dylan Vu, Alexander W. Zaranek, Xiaodi Wu, Snezana Drmanac, Arnold R. Oliphant, William C. Banyai, Bruce Martin, Dennis G. Ballinger, George M. Church, Clifford A. Reid posted to sequencing by zufar on 2009-11-06 22:52:30 as along with 11 people and 1 group qayub sandfire daforerog Peiyong chvlyl JamesBarger natstreet heliopais rwst orzenil frohike Journal picks
	Beyond odds ratios--communicating disease risk based on genetic profiles. [My Copy] Nature reviews. Genetics, Vol. 10, No. 4. (24 April 2009), pp. 264-269. by P. Kraft, S. Wacholder, M. C. Cornelis, et al.F. B. Hu, R. B. Hayes, G. Thomas, R. Hoover, D. J. Hunter, S. Chanock posted to disease_risk by zufar on 2009-11-03 09:05:37 as along with 10 people and 1 group Zephyrus PabloMarin lwaldron pkonings roys daforerog psique misonneh rdiaz guhjy Roswell Cancer Crosstalk
	Detailing regulatory networks through large scale data integration [My Copy] Bioinformatics (13 October 2009), btp588. by Curtis Huttenhower, K. Tsheko Mutungu, Natasha Indik, et al.Woongcheol Yang, Mark Schroeder, Joshua J. Forman, Olga G. Troyanskaya, Hilary A. Coller posted to networks by zufar on 2009-11-02 10:27:55 as along with 4 people aaron_webber ptrobajo rdiaz frohike
	A systems biology approach for pathway level analysis [My Copy] Genome Research, Vol. 17, No. 10. (4 October 2007), pp. 1537-1545. by Sorin Draghici, Purvesh Khatri, Adi L. Tarca, et al.Kashyap Amin, Arina Done, Calin Voichita, Constantin Georgescu, Roberto Romero posted to pathway by zufar on 2009-11-02 10:23:06 as along with 22 people and 2 groups bertelsen tonamswish gbloeb cgaugain ptrobajo pengchy tmmurali dragonrez jfr gurkanbebek grahamc shigepong zwang cabbagezs cerami xingxu shikin idonaldson Pao-Yang thomaskelder heliopais AlexanderPico Bioinformatics OPIG
	Estimation of absolute risk for prostate cancer using genetic markers and family history [My Copy] The Prostate, Vol. 69, No. 14. (2009), pp. 1565-1572. by Jianfeng Xu, Jielin Sun, A. Karim Kader, et al.Sara Lindström, Fredrik Wiklund, Fang-Chi Hsu, Jan-Erik Johansson, S. Lilly Zheng, Gilles Thomas, Richard B. Hayes, Peter Kraft, David J. Hunter, Stephen J. Chanock, William B. Isaacs, Henrik Grönberg posted to disease_risk by zufar on 2009-10-27 18:10:51 as
	Cancer-Specific High-Throughput Annotation of Somatic Mutations: Computational Prediction of Driver Missense Mutations [My Copy] Cancer Res, Vol. 69, No. 16. (15 August 2009), pp. 6660-6667. by Hannah Carter, Sining Chen, Leyla Isik, et al.Svitlana Tyekucheva, Victor E. Velculescu, Kenneth W. Kinzler, Bert Vogelstein, Rachel Karchin posted to somatic_mutations by zufar on 2009-10-24 20:37:23 as along with 5 people kshameer chrisamiller burak ericrpaquet frohike
	Estimating the posterior probability that genome-wide association findings are true or false [My Copy] Bioinformatics, Vol. 25, No. 14. (15 July 2009), pp. 1807-1813. by Jozsef Bukszar, Joseph L. McClay, Edwin J. C. G. van den Oord posted to gwas fdr by zufar on 2009-10-23 18:17:10 as along with 3 people nklee djkt guhjy
	Global patterns of cis variation in human cells revealed by high-density allelic expression analysis [My Copy] Nature Genetics, Vol. 41, No. 11. (18 October 2009), pp. 1216-1222. by Bing Ge, Dmitry K. Pokholok, Tony Kwan, et al.Elin Grundberg, Lisanne Morcos, Dominique J. Verlaan, Jennie Le, Vonda Koka, Kevin C. L. Lam, Vincent Gagne, Joana Dias, Rose Hoberman, Alexandre Montpetit, Marie-Michele Joly, Edward J. Harvey, Daniel Sinnett, Patrick Beaulieu, Robert Hamon, Alexandru Graziani, Ken Dewar, Eef Harmsen, Jacek Majewski, Harald H. H. Goring, Anna K. Naumova, Mathieu Blanchette, Kevin L. Gunderson, Tomi Pastinen posted to eqtl by zufar on 2009-10-22 10:52:38 as along with 10 people and 1 group bpcusack fenghezi songpku gderwin djkt qayub dill2009 psique daforerog vplagnol Journal picks
	Origins and functional impact of copy number variation in the human genome [My Copy] Nature, Vol. advance online publication (07 October 2009) by Donald F. Conrad, Dalila Pinto, Richard Redon, et al.Lars Feuk, Omer Gokcumen, Yujun Zhang, Jan Aerts, T. Daniel Andrews, Chris Barnes, Peter Campbell, Tomas Fitzgerald, Min Hu, Chun H. Ihm, Kati Kristiansson, Daniel G. MacArthur, Jeffrey R. MacDonald, Ifejinelo Onyiah, Andy W. Pang, Sam Robson, Kathy Stirrups, Armand Valsesia, Klaudia Walter, John Wei, Chris Tyler-Smith, Nigel P. Carter, Charles Lee, Stephen W. Scherer, Matthew E. Hurles posted to cnv by zufar on 2009-10-22 10:51:06 as along with 20 people and 1 group Zephyrus gthorisson vplagnol biovils psique chvlyl daed daforerog jessopher DrRichardBadge operon colinveal frohike sf11 sameersoi polivares dswan qayub bpcusack rdiaz Journal picks
	Pathway and network-based analysis of genome-wide association studies in multiple sclerosis [My Copy] Hum. Mol. Genet., Vol. 18, No. 11. (1 June 2009), pp. 2078-2090. by S. E. Baranzini, N. W. Galwey, J. Wang, et al.P. Khankhanian, R. Lindberg, D. Pelletier, W. Wu, B. M. Uitdehaag, L. Kappos, C. H. Polman, P. M. Matthews, S. L. Hauser, R. A. Gibson, J. R. Oksenberg, M. R. Barnes posted to snp by zufar on 2009-10-21 19:47:10 as along with 4 people nsc129psu shikin daforerog jdbowes
	Gene set-based analysis of polymorphisms: finding pathways or biological processes associated to traits in genome-wide association studies. [My Copy] Nucleic acids research, Vol. 37, No. Web Server issue. (1 July 2009), pp. W340-344. by Ignacio Medina, David Montaner, Nuria Bonifaci, et al.Miguel Angel A. Pujana, José Carbonell, Joaquin Tarraga, Fatima Al-Shahrour, Joaquin Dopazo posted to snp-pathways by zufar on 2009-10-21 19:14:10 as along with 5 people daed ptrobajo daforerog kimorley guhjy
	Gene ontology analysis of GWA study data sets provides insights into the biology of bipolar disorder. [My Copy] American journal of human genetics, Vol. 85, No. 1. (10 July 2009), pp. 13-24. by Peter Holmans, Elaine K. Green, Jaspreet Singh S. Pahwa, et al.Manuel A. Ferreira, Shaun M. Purcell, Pamela Sklar, Wellcome Trust Case-Control Consortium, Michael J. Owen, Michael C. O'Donovan, Nick Craddock posted to snp-pathways by zufar on 2009-10-21 19:03:12 as along with 4 people and 1 group ns6 rdiaz psique daforerog Journal picks
	SNPHarvester: a filtering-based approach for detecting epistatic interactions in genome-wide association studies [My Copy] Bioinformatics, Vol. 25, No. 4. (15 February 2009), pp. 504-511. by Can Yang, Zengyou He, Xiang Wan, Qiang Yang, Hong Xue, Weichuan Yu posted to snp-pathways by zufar on 2009-10-21 18:46:09 as along with 6 people daed maren pkonings djkt guhjy daforerog
	The SNP ratio test: pathway analysis of genome-wide association datasets [My Copy] Bioinformatics, Vol. 25, No. 20. (15 October 2009), pp. 2762-2763. by Colm O'Dushlaine, Elaine Kenny, Elizabeth A. Heron, et al.Ricardo Segurado, Michael Gill, Derek W. Morris, Aiden Corvin posted to snp-pathways by zufar on 2009-10-21 18:25:49 as along with 8 people shikin liqbbi daforerog rdiaz natstreet pkonings guhjy druvus
	GSEA-SNP: Applying Gene Set Enrichment Analysis to SNP data from genome-wide association studies. [My Copy] Bioinformatics (Oxford, England) (14 October 2008) by Marit Holden, Shiwei Deng, Leszek Wojnowski, Bettina Kulle posted to snp-pathways by zufar on 2009-10-21 18:10:58 as along with 2 people daforerog guhjy
	Path: a tool to facilitate pathway-based genetic association analysis. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 18. (15 September 2009), pp. 2444-2446. by David Zamar, Ben Tripp, George Ellis, Denise Daley posted to snp-pathways by zufar on 2009-10-21 18:08:54 as along with 5 people jamesmorris daforerog natstreet pkonings guhjy
	Integrating chromosomal aberrations and gene expression profiles to dissect rectal tumorigenesis [My Copy] BMC Cancer, Vol. 8, No. 1. (2008), 314. by Esther Lips, Ronald van Eijk, Eelco de Graaf, et al.Jan Oosting, Noel de Miranda, Tom Karsten, Cornelis van de Velde, Paul Eilers, Rob Tollenaar, Tom van Wezel, Hans Morreau posted to cancer by zufar on 2009-10-09 13:37:53 as along with 7 people dolchan rdiaz tvanwezel jfr imina ealloza frohike
	Systematic bioinformatic analysis of expression levels of 17,330 human genes across 9,783 samples from 175 types of healthy and pathological tissues. [My Copy] Genome biology, Vol. 9, No. 9. (2008) by Sami Kilpinen, Reija Autio, Kalle Ojala, et al.Kristiina Iljin, Elmar Bucher, Henri Sara, Tommi Pisto, Matti Saarela, Rolf I. Skotheim, Mari Björkman, John-Patrick P. Mpindi, Saija Haapa-Paananen, Paula Vainio, Henrik Edgren, Maija Wolf, Jaakko Astola, Matthias Nees, Sampsa Hautaniemi, Olli Kallioniemi posted to gene-expression cancer by zufar on 2009-10-09 13:33:38 as along with 10 people and 1 group daforerog jfr shikin grahamc pengchy imina guhjy klo fpattyn dolchan GeneGo
	Ratio adjustment and calibration scheme for gene-wise normalization to enhance microarray inter-study prediction [My Copy] Bioinformatics, Vol. 25, No. 13. (1 July 2009), pp. 1655-1661. by Chunrong Cheng, Kui Shen, Chi Song, Jianhua Luo, George C. Tseng posted to meta-analysis by zufar on 2009-09-30 11:09:44 as along with 2 people and 1 group rdiaz dswan Bioinformatics
	Merging two gene-expression studies via cross-platform normalization [My Copy] Bioinformatics, Vol. 24, No. 9. (1 May 2008), pp. 1154-1160. by Andrey A. Shabalin, Hakon Tjelmeland, Cheng Fan, Charles M. Perou, Andrew B. Nobel posted to meta-analysis by zufar on 2009-09-30 11:07:39 as along with 5 people and 1 group jfr shikin askrajiv aviad_work guhjy Bioinformatics
	Prediction and Interaction in Complex Disease Genetics: Experience in Type 1 Diabetes [My Copy] PLoS Genet, Vol. 5, No. 7. (3 July 2009), e1000540. by David G. Clayton posted to disease_prediction disease_genetics by zufar on 2009-09-30 11:01:50 as along with 5 people and 1 group merpublic ptrobajo rdiaz kimorley psique Journal picks
	Cross-Study Projections of Genomic Biomarkers: An Evaluation in Cancer Genomics [My Copy] PLoS ONE, Vol. 4, No. 2. (19 February 2009), e4523. by Joseph E. Lucas, Carlos M. Carvalho, Julia L. Chen, Jen-Tsan Chi, Mike West posted to signature-genes factor_analysis by zufar on 2009-09-30 11:00:13 as along with 4 people jfr frohike jmstat bertelsen
	A global view of gene activity and alternative splicing by deep sequencing of the human transcriptome. [My Copy] Science (New York, N.Y.), Vol. 321, No. 5891. (15 August 2008), pp. 956-960. by M. Sultan, M. H. Schulz, H. Richard, et al.A. Magen, A. Klingenhoff, M. Scherf, M. Seifert, T. Borodina, A. Soldatov, D. Parkhomchuk, D. Schmidt, S. O'Keeffe, S. Haas, M. Vingron, H. Lehrach, M. L. Yaspo posted to alternative_splicing by zufar on 2009-09-29 15:01:02 as along with 28 people and 2 groups hzoltan eszczurek n00c dna inesdesantiago ilyashl TRHvidsten poschm bertelsen ivanek guhjy wutongbin jfr raistrick gracio xingxu psique oelemento Ema reyez caseybrown kjglennie dh0000 GeeSharpMinor balicea djkt ArtemPankin zwang BenosLab Khavkin's lab
	Higher criticism thresholding: Optimal feature selection when useful features are rare and weak [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 39. (30 September 2008), pp. 14790-14795. by David Donoho, Jiashun Jin posted to feature-selection classification by zufar on 2009-09-25 11:14:18 as along with 6 people guhjy sschurer phoenixzxl rdiaz briordan sg45653
	Some theory for Fisher's linear discriminant function, `naive Bayes', and some alternatives when there are many more variables than observations [My Copy] Bernoulli, Vol. 10, No. 6. (2004), pp. 989-1010. by Peter J. Bickel, Elizaveta Levina posted to classification by zufar on 2009-09-25 11:08:57 as along with 2 people agogoh3 bpacker
	A Classifier-based approach to identify genetic similarities between diseases [My Copy] Bioinformatics, Vol. 25, No. 12. (15 June 2009), pp. i21-29. by Marc A. Schaub, Irene M. Kaplow, Marina Sirota, Chuong B. Do, Atul J. Butte, Serafim Batzoglou posted to classification by zufar on 2009-09-25 11:03:52 as along with 4 people jfr rdiaz ddunbar djkt
	Filtering Genes for Cluster and Network Analysis [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 193. by David Tritchler, Elena Parkhomenko, Joseph Beyene posted to feature_selection by zufar on 2009-09-23 16:21:51 as along with 6 people and 1 group dswan shikin lwaldron rdiaz bertelsen erexhepa Bioinformatics
	Detecting intergene correlation changes in microarray analysis: a new approach to gene selection [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 20. by Rui Hu, Xing Qiu, Galina Glazko, Lev Klebanov, Andrei Yakovlev posted to correlation by zufar on 2009-09-23 16:20:43 as along with 9 people and 1 group sotacam BUR44Dcul jfr rdiaz provero Zephyrus renatomilani guhjy irinamohorianu Bioinformatics
	Integrated analysis of DNA copy number and gene expression microarray data using gene sets [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (29 June 2009), 203. by Renee Menezes, Marten Boetzer, Melle Sieswerda, Gert J. van Ommen, Judith Boer posted to cnv by zufar on 2009-09-23 16:19:35 as along with 7 people and 1 group ptrobajo rdiaz dswan guhjy lwaldron shikin barriot Bioinformatics
	Genotype-phenotype databases: challenges and solutions for the post-genomic era. [My Copy] Nature reviews. Genetics, Vol. 10, No. 1. (01 January 2009), pp. 9-18. by Gudmundur A. Thorisson, Juha Muilu, Anthony J. Brookes posted to genotype-phenotype by zufar on 2009-09-23 16:15:27 as along with 17 people and 2 groups ilyashl installe frohike jfr Keywan natstreet druvus dullhunk nuin balicea dbk Zephyrus misonneh Nineveh guhjy pkonings paszkows Ondex SABR - Bioenergy project Roswell Cancer Crosstalk
	A robust statistical method for case-control association testing with copy number variation. [My Copy] Nature genetics, Vol. 40, No. 10. (7 October 2008), pp. 1245-1252. by Chris Barnes, Vincent Plagnol, Tomas Fitzgerald, et al.Richard Redon, Jonathan Marchini, David Clayton, Matthew E. Hurles posted to gwas by zufar on 2009-09-23 16:13:25 as along with 16 people and 1 group biovils daed daforerog pengchy ptrobajo vplagnol waszak caseybrown Zephyrus dakelley buyske misonneh djkt rdiaz Stew guhjy Roswell Cancer Crosstalk
	Network inference using informative priors [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 38. (2008), pp. 14313-14318. by Sach Mukherjee, Terence P. Speed posted to network_inference by zufar on 2009-09-23 16:00:55 as along with 10 people and 1 group bertelsen ggallone guhjy Borelli ptrobajo jfr markstoehr stringertheory roys tmmurali Jarman Lab

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snp	35
gene-expression	27
breast-neoplasms	18
pattern-recognition	18
gwas	17
cluster-analysis	16
gsea	16
mutation	16
genotype	15
neoplasms	13
phenotype	13
neoplasm	12
tumor	12
bayes	11
cancer	10
meta-analysis	10
tumor-markers	10
affy	9
classification	9
haplotypes	9
signature-genes	9
neoplasms-genetics	8
prognosis	8
alleles	7
diagnosis	7
genetic-markers	7
leukemia	7
neoplasms-metabolism	7
review	7
breast_cancer	6
fdr	6
glioblastoma	6
linear-models	6
neoplasm-genetics	6
neoplasms-diagnosis	6
network-modules	6
prostatic-neoplasms	6
snp-pathways	6
microarray	5
myeloid	5
normalization	5
quality-control	5
workflow	5
clustering	4
cnv	4
colorectal-neoplasms	4
expression	4
feature-selection	4
haplotypes-genetics	4
mutation-genetics	4
network-cluster	4
nonparametric	4
regression-analysis	4
rna-genetics	4
biological-markers	3
brain-neoplasms	3
can_genes	3
carcinoma	3
differential_expression	3
false-discovery-rate	3
genechip	3
genetic-diseases	3
microarray-analysis	3
pathway-signature	3
potts	3
quantitative-trait	3
risk-factors	3
adenocarcinoma	2
alzheimer-disease	2
analysis-of-variance	2
cabig	2
classifiers	2
clusters	2
crohn-disease	2
diagnostic-tests	2
disease	2
disease-genetics	2
disease_risk	2
eqtl	2
expression_networks	2
feature_selection	2
gene_expression	2
genotype-phenotype	2
mendeley	2
multiple-comparisons	2
network	2
networks	2
pathway-activity	2
pathway-eqtl	2
scale-free	2
signature-pathways	2
survival-analysis	2
validation	2
variable-selection	2
alternative_splicing	1
bayesian_approach	1
biclustering	1
bimodality	1
book	1
check_gsea	1
cmap	1
colon_cancer	1
copa	1
correlation	1
cross-study	1
cross-validation	1
data	1
dbgap	1
density-estimation	1
diffefential_correlation	1
dimension-reduction	1
disease_genetics	1
disease_prediction	1
dlda	1
drug_target	1
empirical-bayes	1
factor_analysis	1
friedman-test	1
fsnp	1
gene_expression_patterns	1
gene-fusion	1
gene-networks	1
glioma	1
graph-clustering	1
graph-partitioning	1
gsa	1
interactome	1
kappa	1
kinetic	1
lod-score	1
logistic-models	1
mcode	1
mirna	1
mode	1
model-selection	1
modularity	1
molecular-networks	1
molecular-structure	1
network_classification	1
network-comparison	1
network-evolution	1
network_inference	1
nlp	1
order-statistics	1
parkinson_disease	1
pathway	1
pathway-classification	1
pevzner	1
repo	1
sam-gs	1
selection-bias	1
sequencing	1
snp-phenotype	1
somatic_mutations	1
unimodality	1

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