zufar's library 719 articles Export

	Moderated effect size and P-value combinations for microarray meta-analyses [My Copy] Bioinformatics, Vol. 25, No. 20. (15 October 2009), pp. 2692-2699. by Guillemette Marot, Jean-Louis Foulley, Claus-Dieter Mayer, Florence Jaffrezic posted to meta-analysis by zufar on 2009-11-08 19:54:39 as along with 6 people shikin dswan renatomilani rdiaz nuin daforerog
	Human Genome Sequencing Using Unchained Base Reads on Self-Assembling DNA Nanoarrays [My Copy] Science (5 November 2009), 1181498. by Radoje Drmanac, Andrew B. Sparks, Matthew J. Callow, et al.Aaron L. Halpern, Norman L. Burns, Bahram G. Kermani, Paolo Carnevali, Igor Nazarenko, Geoffrey B. Nilsen, George Yeung, Fredrik Dahl, Andres Fernandez, Bryan Staker, Krishna P. Pant, Jonathan Baccash, Adam P. Borcherding, Anushka Brownley, Ryan Cedeno, Linsu Chen, Dan Chernikoff, Alex Cheung, Razvan Chirita, Benjamin Curson, Jessica C. Ebert, Coleen R. Hacker, Robert Hartlage, Brian Hauser, Steve Huang, Yuan Jiang, Vitali Karpinchyk, Mark Koenig, Calvin Kong, Tom Landers, Catherine Le, Jia Liu, Celeste E. McBride, Matt Morenzoni, Robert E. Morey, Karl Mutch, Helena Perazich, Kimberly Perry, Brock A. Peters, Joe Peterson, Charit L. Pethiyagoda, Kaliprasad Pothuraju, Claudia Richter, Abraham M. Rosenbaum, Shaunak Roy, Jay Shafto, Uladzislau Sharanhovich, Karen W. Shannon, Conrad G. Sheppy, Michel Sun, Joseph V. Thakuria, Anne Tran, Dylan Vu, Alexander W. Zaranek, Xiaodi Wu, Snezana Drmanac, Arnold R. Oliphant, William C. Banyai, Bruce Martin, Dennis G. Ballinger, George M. Church, Clifford A. Reid posted to sequencing by zufar on 2009-11-06 22:52:30 as along with 2 people orzenil frohike
	Beyond odds ratios--communicating disease risk based on genetic profiles. [My Copy] Nature reviews. Genetics, Vol. 10, No. 4. (24 April 2009), pp. 264-269. by P. Kraft, S. Wacholder, M. C. Cornelis, et al.F. B. Hu, R. B. Hayes, G. Thomas, R. Hoover, D. J. Hunter, S. Chanock posted to disease_risk by zufar on 2009-11-03 09:05:37 as along with 10 people and 1 group Zephyrus PabloMarin lwaldron pkonings roys daforerog psique misonneh rdiaz guhjy Roswell Cancer Crosstalk
	Detailing regulatory networks through large scale data integration [My Copy] Bioinformatics (13 October 2009), btp588. by Curtis Huttenhower, K. Tsheko Mutungu, Natasha Indik, et al.Woongcheol Yang, Mark Schroeder, Joshua J. Forman, Olga G. Troyanskaya, Hilary A. Coller posted to networks by zufar on 2009-11-02 10:27:55 as along with 3 people ptrobajo rdiaz frohike
	A systems biology approach for pathway level analysis [My Copy] Genome Research, Vol. 17, No. 10. (4 October 2007), pp. 1537-1545. by Sorin Draghici, Purvesh Khatri, Adi L. Tarca, et al.Kashyap Amin, Arina Done, Calin Voichita, Constantin Georgescu, Roberto Romero posted to pathway by zufar on 2009-11-02 10:23:06 as along with 22 people and 2 groups bertelsen tonamswish gbloeb cgaugain ptrobajo pengchy tmmurali dragonrez jfr gurkanbebek grahamc shigepong zwang cabbagezs cerami xingxu shikin idonaldson Pao-Yang thomaskelder heliopais AlexanderPico Bioinformatics OPIG
	Estimation of absolute risk for prostate cancer using genetic markers and family history [My Copy] The Prostate, Vol. 69, No. 14. (2009), pp. 1565-1572. by Jianfeng Xu, Jielin Sun, A. Karim Kader, et al.Sara Lindström, Fredrik Wiklund, Fang-Chi Hsu, Jan-Erik Johansson, S. Lilly Zheng, Gilles Thomas, Richard B. Hayes, Peter Kraft, David J. Hunter, Stephen J. Chanock, William B. Isaacs, Henrik Grönberg posted to disease_risk by zufar on 2009-10-27 18:10:51 as
	Cancer-Specific High-Throughput Annotation of Somatic Mutations: Computational Prediction of Driver Missense Mutations [My Copy] Cancer Res, Vol. 69, No. 16. (15 August 2009), pp. 6660-6667. by Hannah Carter, Sining Chen, Leyla Isik, et al.Svitlana Tyekucheva, Victor E. Velculescu, Kenneth W. Kinzler, Bert Vogelstein, Rachel Karchin posted to somatic_mutations by zufar on 2009-10-24 20:37:23 as along with 5 people kshameer chrisamiller burak ericrpaquet frohike
	Estimating the posterior probability that genome-wide association findings are true or false [My Copy] Bioinformatics, Vol. 25, No. 14. (15 July 2009), pp. 1807-1813. by Jozsef Bukszar, Joseph L. McClay, Edwin J. C. G. van den Oord posted to gwas fdr by zufar on 2009-10-23 18:17:10 as along with 3 people nklee djkt guhjy
	Global patterns of cis variation in human cells revealed by high-density allelic expression analysis [My Copy] Nature Genetics, Vol. 41, No. 11. (18 October 2009), pp. 1216-1222. by Bing Ge, Dmitry K. Pokholok, Tony Kwan, et al.Elin Grundberg, Lisanne Morcos, Dominique J. Verlaan, Jennie Le, Vonda Koka, Kevin C. L. Lam, Vincent Gagne, Joana Dias, Rose Hoberman, Alexandre Montpetit, Marie-Michele Joly, Edward J. Harvey, Daniel Sinnett, Patrick Beaulieu, Robert Hamon, Alexandru Graziani, Ken Dewar, Eef Harmsen, Jacek Majewski, Harald H. H. Goring, Anna K. Naumova, Mathieu Blanchette, Kevin L. Gunderson, Tomi Pastinen posted to eqtl by zufar on 2009-10-22 10:52:38 as along with 9 people and 1 group fenghezi songpku gderwin djkt qayub dill2009 psique daforerog vplagnol Journal picks
	Origins and functional impact of copy number variation in the human genome [My Copy] Nature, Vol. advance online publication (07 October 2009) by Donald F. Conrad, Dalila Pinto, Richard Redon, et al.Lars Feuk, Omer Gokcumen, Yujun Zhang, Jan Aerts, T. Daniel Andrews, Chris Barnes, Peter Campbell, Tomas Fitzgerald, Min Hu, Chun H. Ihm, Kati Kristiansson, Daniel G. MacArthur, Jeffrey R. MacDonald, Ifejinelo Onyiah, Andy W. Pang, Sam Robson, Kathy Stirrups, Armand Valsesia, Klaudia Walter, John Wei, Chris Tyler-Smith, Nigel P. Carter, Charles Lee, Stephen W. Scherer, Matthew E. Hurles posted to cnv by zufar on 2009-10-22 10:51:06 as along with 16 people and 1 group psique chvlyl daed daforerog jessopher DrRichardBadge operon colinveal frohike sf11 sameersoi polivares dswan qayub bpcusack rdiaz Journal picks
	Pathway and network-based analysis of genome-wide association studies in multiple sclerosis. [My Copy] Human molecular genetics, Vol. 18, No. 11. (1 June 2009), pp. 2078-2090. by S. E. Baranzini, N. W. Galwey, J. Wang, et al.P. Khankhanian, R. Lindberg, D. Pelletier, W. Wu, B. M. Uitdehaag, L. Kappos, C. H. Polman, P. M. Matthews, S. L. Hauser, R. A. Gibson, J. R. Oksenberg, M. R. Barnes posted to snp by zufar on 2009-10-21 19:47:10 as along with 3 people shikin daforerog jdbowes
	Gene set-based analysis of polymorphisms: finding pathways or biological processes associated to traits in genome-wide association studies. [My Copy] Nucleic acids research, Vol. 37, No. Web Server issue. (1 July 2009), pp. W340-344. by Ignacio Medina, David Montaner, Nuria Bonifaci, et al.Miguel Angel A. Pujana, José Carbonell, Joaquin Tarraga, Fatima Al-Shahrour, Joaquin Dopazo posted to snp-pathways by zufar on 2009-10-21 19:14:10 as along with 5 people daed ptrobajo daforerog kimorley guhjy
	Gene ontology analysis of GWA study data sets provides insights into the biology of bipolar disorder. [My Copy] American journal of human genetics, Vol. 85, No. 1. (10 July 2009), pp. 13-24. by Peter Holmans, Elaine K. Green, Jaspreet Singh S. Pahwa, et al.Manuel A. Ferreira, Shaun M. Purcell, Pamela Sklar, Wellcome Trust Case-Control Consortium, Michael J. Owen, Michael C. O'Donovan, Nick Craddock posted to snp-pathways by zufar on 2009-10-21 19:03:12 as along with 4 people and 1 group ns6 rdiaz psique daforerog Journal picks
	SNPHarvester: a filtering-based approach for detecting epistatic interactions in genome-wide association studies [My Copy] Bioinformatics, Vol. 25, No. 4. (15 February 2009), pp. 504-511. by Can Yang, Zengyou He, Xiang Wan, Qiang Yang, Hong Xue, Weichuan Yu posted to snp-pathways by zufar on 2009-10-21 18:46:09 as along with 6 people daed maren pkonings djkt guhjy daforerog
	The SNP ratio test: pathway analysis of genome-wide association datasets [My Copy] Bioinformatics, Vol. 25, No. 20. (15 October 2009), pp. 2762-2763. by Colm O'Dushlaine, Elaine Kenny, Elizabeth A. Heron, et al.Ricardo Segurado, Michael Gill, Derek W. Morris, Aiden Corvin posted to snp-pathways by zufar on 2009-10-21 18:25:49 as along with 8 people shikin liqbbi daforerog rdiaz natstreet pkonings guhjy druvus
	GSEA-SNP: Applying Gene Set Enrichment Analysis to SNP data from genome-wide association studies. [My Copy] Bioinformatics (Oxford, England) (14 October 2008) by Marit Holden, Shiwei Deng, Leszek Wojnowski, Bettina Kulle posted to snp-pathways by zufar on 2009-10-21 18:10:58 as along with 2 people daforerog guhjy
	Path: a tool to facilitate pathway-based genetic association analysis. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 18. (15 September 2009), pp. 2444-2446. by David Zamar, Ben Tripp, George Ellis, Denise Daley posted to snp-pathways by zufar on 2009-10-21 18:08:54 as along with 5 people jamesmorris daforerog natstreet pkonings guhjy
	Integrating chromosomal aberrations and gene expression profiles to dissect rectal tumorigenesis [My Copy] BMC Cancer, Vol. 8, No. 1. (2008), 314. by Esther Lips, Ronald van Eijk, Eelco de Graaf, et al.Jan Oosting, Noel de Miranda, Tom Karsten, Cornelis van de Velde, Paul Eilers, Rob Tollenaar, Tom van Wezel, Hans Morreau posted to cancer by zufar on 2009-10-09 13:37:53 as along with 7 people dolchan rdiaz tvanwezel jfr imina ealloza frohike
	Systematic bioinformatic analysis of expression levels of 17,330 human genes across 9,783 samples from 175 types of healthy and pathological tissues. [My Copy] Genome biology, Vol. 9, No. 9. (2008) by Sami Kilpinen, Reija Autio, Kalle Ojala, et al.Kristiina Iljin, Elmar Bucher, Henri Sara, Tommi Pisto, Matti Saarela, Rolf I. Skotheim, Mari Björkman, John-Patrick P. Mpindi, Saija Haapa-Paananen, Paula Vainio, Henrik Edgren, Maija Wolf, Jaakko Astola, Matthias Nees, Sampsa Hautaniemi, Olli Kallioniemi posted to gene-expression cancer by zufar on 2009-10-09 13:33:38 as along with 10 people and 1 group daforerog jfr shikin grahamc pengchy imina guhjy klo fpattyn dolchan GeneGo
	Ratio adjustment and calibration scheme for gene-wise normalization to enhance microarray inter-study prediction [My Copy] Bioinformatics, Vol. 25, No. 13. (1 July 2009), pp. 1655-1661. by Chunrong Cheng, Kui Shen, Chi Song, Jianhua Luo, George C. Tseng posted to meta-analysis by zufar on 2009-09-30 11:09:44 as along with 2 people and 1 group rdiaz dswan Bioinformatics
	Merging two gene-expression studies via cross-platform normalization [My Copy] Bioinformatics, Vol. 24, No. 9. (1 May 2008), pp. 1154-1160. by Andrey A. Shabalin, Hakon Tjelmeland, Cheng Fan, Charles M. Perou, Andrew B. Nobel posted to meta-analysis by zufar on 2009-09-30 11:07:39 as along with 5 people and 1 group jfr shikin askrajiv aviad_work guhjy Bioinformatics
	Prediction and Interaction in Complex Disease Genetics: Experience in Type 1 Diabetes [My Copy] PLoS Genet, Vol. 5, No. 7. (3 July 2009), e1000540. by David G. Clayton posted to disease_prediction disease_genetics by zufar on 2009-09-30 11:01:50 as along with 5 people and 1 group merpublic ptrobajo rdiaz kimorley psique Journal picks
	Cross-Study Projections of Genomic Biomarkers: An Evaluation in Cancer Genomics [My Copy] PLoS ONE, Vol. 4, No. 2. (19 February 2009), e4523. by Joseph E. Lucas, Carlos M. Carvalho, Julia L. Chen, Jen-Tsan Chi, Mike West posted to signature-genes factor_analysis by zufar on 2009-09-30 11:00:13 as along with 4 people jfr frohike jmstat bertelsen
	A global view of gene activity and alternative splicing by deep sequencing of the human transcriptome. [My Copy] Science (New York, N.Y.), Vol. 321, No. 5891. (15 August 2008), pp. 956-960. by M. Sultan, M. H. Schulz, H. Richard, et al.A. Magen, A. Klingenhoff, M. Scherf, M. Seifert, T. Borodina, A. Soldatov, D. Parkhomchuk, D. Schmidt, S. O'Keeffe, S. Haas, M. Vingron, H. Lehrach, M. L. Yaspo posted to alternative_splicing by zufar on 2009-09-29 15:01:02 as along with 27 people and 2 groups eszczurek n00c dna inesdesantiago ilyashl TRHvidsten poschm bertelsen ivanek guhjy wutongbin jfr raistrick gracio xingxu psique oelemento Ema reyez caseybrown kjglennie dh0000 GeeSharpMinor balicea djkt ArtemPankin zwang BenosLab Khavkin's lab
	Higher criticism thresholding: Optimal feature selection when useful features are rare and weak [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 39. (30 September 2008), pp. 14790-14795. by David Donoho, Jiashun Jin posted to feature-selection classification by zufar on 2009-09-25 11:14:18 as along with 6 people guhjy sschurer phoenixzxl rdiaz briordan sg45653
	Some theory for Fisher's linear discriminant function, `naive Bayes', and some alternatives when there are many more variables than observations [My Copy] Bernoulli, Vol. 10, No. 6. (2004), pp. 989-1010. by Peter J. Bickel, Elizaveta Levina posted to classification by zufar on 2009-09-25 11:08:57 as along with 2 people agogoh3 bpacker
	A Classifier-based approach to identify genetic similarities between diseases [My Copy] Bioinformatics, Vol. 25, No. 12. (15 June 2009), pp. i21-29. by Marc A. Schaub, Irene M. Kaplow, Marina Sirota, Chuong B. Do, Atul J. Butte, Serafim Batzoglou posted to classification by zufar on 2009-09-25 11:03:52 as along with 3 people rdiaz ddunbar djkt
	Filtering Genes for Cluster and Network Analysis [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 193. by David Tritchler, Elena Parkhomenko, Joseph Beyene posted to feature_selection by zufar on 2009-09-23 16:21:51 as along with 6 people and 1 group dswan shikin lwaldron rdiaz bertelsen erexhepa Bioinformatics
	Detecting intergene correlation changes in microarray analysis: a new approach to gene selection [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 20. by Rui Hu, Xing Qiu, Galina Glazko, Lev Klebanov, Andrei Yakovlev posted to correlation by zufar on 2009-09-23 16:20:43 as along with 9 people and 1 group sotacam BUR44Dcul jfr rdiaz provero Zephyrus renatomilani guhjy irinamohorianu Bioinformatics
	Integrated analysis of DNA copy number and gene expression microarray data using gene sets [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (29 June 2009), 203. by Renee Menezes, Marten Boetzer, Melle Sieswerda, Gert J. van Ommen, Judith Boer posted to cnv by zufar on 2009-09-23 16:19:35 as along with 7 people and 1 group ptrobajo rdiaz dswan guhjy lwaldron shikin barriot Bioinformatics
	Genotype\|[ndash]\|phenotype databases: challenges and solutions for the post-genomic era [My Copy] Nat Rev Genet, Vol. 10, No. 1. (01 January 2009), pp. 9-18. by Gudmundur A. Thorisson, Juha Muilu, Anthony J. Brookes posted to genotype-phenotype by zufar on 2009-09-23 16:15:27 as along with 17 people and 2 groups ilyashl installe frohike jfr Keywan natstreet druvus dullhunk nuin balicea dbk Zephyrus misonneh Nineveh guhjy pkonings paszkows Ondex SABR - Bioenergy project Roswell Cancer Crosstalk
	A robust statistical method for case-control association testing with copy number variation. [My Copy] Nature genetics, Vol. 40, No. 10. (7 October 2008), pp. 1245-1252. by Chris Barnes, Vincent Plagnol, Tomas Fitzgerald, et al.Richard Redon, Jonathan Marchini, David Clayton, Matthew E. Hurles posted to gwas by zufar on 2009-09-23 16:13:25 as along with 15 people and 1 group daed daforerog pengchy ptrobajo vplagnol waszak caseybrown Zephyrus dakelley buyske misonneh djkt rdiaz Stew guhjy Roswell Cancer Crosstalk
	Network inference using informative priors [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 38. (2008), pp. 14313-14318. by Sach Mukherjee, Terence P. Speed posted to network_inference by zufar on 2009-09-23 16:00:55 as along with 10 people and 1 group bertelsen ggallone guhjy Borelli ptrobajo jfr markstoehr stringertheory roys tmmurali Jarman Lab
	A review of feature selection techniques in bioinformatics [My Copy] Bioinformatics, Vol. 23, No. 19. (1 October 2007), pp. 2507-2517. by Yvan Saeys, Inaki Inza, Pedro Larranaga posted to feature_selection by zufar on 2009-09-23 15:58:09 as along with 27 people and 1 group Shibby stharward jjrodriguez briordan phoenixzxl ipark-kaist prerna svozil bertelsen VGreiff rsantana druvus jfr giovenko guhjy chad_davis aviad_work frohike grahamc shigepong lp2 cabbagezs ryanraaum vietanh0 eacosta aaalxy srp33 Bioinformatics
	Identifying differentially expressed subnetworks with MMG. [My Copy] Bioinformatics (Oxford, England), Vol. 24, No. 23. (1 December 2008), pp. 2792-2793. by J. Noirel, G. Sanguinetti, P. C. Wright posted to network-modules by zufar on 2009-09-23 15:55:55 as along with 11 people pauldobson jfr sg45653 pengchy behindtherabbit roys jiayi369 tmmurali bertelsen guhjy rdiaz
	Statistical challenges in preprocessing in microarray experiments in cancer. [My Copy] Clinical cancer research : an official journal of the American Association for Cancer Research, Vol. 14, No. 19. (1 October 2008), pp. 5959-5966. by K. Owzar, W. T. Barry, S. H. Jung, I. Sohn, S. L. George posted to normalization by zufar on 2009-09-23 15:54:25 as along with 7 people and 1 group lwaldron Zephyrus rdiaz jfr shikin guhjy winterschlaefer Bioinformatics
	The Genomic Landscapes of Human Breast and Colorectal Cancers. [My Copy] Science (11 October 2007) by Laura D D. Wood, D Williams W. Parsons, Siân Jones, et al.Jimmy Lin, Tobias Sjöblom, Rebecca J J. Leary, Dong Shen, Simina M M. Boca, Thomas Barber, Janine Ptak, Natalie Silliman, Steve Szabo, Zoltan Dezso, Vadim Ustyanksky, Tatiana Nikolskaya, Yuri Nikolsky, Rachel Karchin, Paul A A. Wilson, Joshua S S. Kaminker, Zemin Zhang, Randal Croshaw, Joseph Willis, Dawn Dawson, Michail Shipitsin, James K V K. Willson, Saraswati Sukumar, Kornelia Polyak, Ben Ho H. Park, Charit L L. Pethiyagoda, P V Krishna V. Pant, Dennis G G. Ballinger, Andrew B B. Sparks, James Hartigan, Douglas R R. Smith, Erick Suh, Nickolas Papadopoulos, Phillip Buckhaults, Sanford D D. Markowitz, Giovanni Parmigiani, Kenneth W W. Kinzler, Victor E E. Velculescu, Bert Vogelstein posted to cancer by zufar on 2009-09-23 15:53:48 as along with 17 people and 1 group ssgong daed guhjy tmmurali jfr rdiaz eisei ramensky massivemayhem bioyang cabbagezs xingxu shikin renatomilani gwenknight cerami srp33 VUMCGenomics
	Gene-set analysis and reduction [My Copy] Brief Bioinform, Vol. 10, No. 1. (1 January 2009), pp. 24-34. by Irina Dinu, John D. Potter, Thomas Mueller, et al.Qi Liu, Adeniyi J. Adewale, Gian S. Jhangri, Gunilla Einecke, Konrad S. Famulski, Philip Halloran, Yutaka Yasui posted to gsea by zufar on 2009-09-23 15:53:11 as along with 9 people jfr ipark-kaist renatomilani shikin tmmurali guhjy ihpark nuin ptrobajo
	Dynamic modularity in protein interaction networks predicts breast cancer outcome. [My Copy] Nature biotechnology, Vol. 27, No. 2. (1 February 2009), pp. 199-204. by Ian W. Taylor, Rune Linding, David Warde-Farley, et al.Yongmei Liu, Catia Pesquita, Daniel Faria, Shelley Bull, Tony Pawson, Quaid Morris, Jeffrey L. Wrana posted to breast_cancer by zufar on 2009-09-22 17:27:54 as along with 14 people and 1 group ukhan guhjy jfr frohike fenghezi ptrobajo jaimie nedwards dakelley absterga phoenixzxl grahamc provero brianb cube_and_beyond
	Controlling the False Discovery Rate: A Practical and Powerful Approach to Multiple Testing [My Copy] Journal of the Royal Statistical Society. Series B (Methodological), Vol. 57, No. 1. (1995), pp. 289-300. by Yoav Benjamini, Yosef Hochberg posted to fdr by zufar on 2009-09-22 17:26:16 as along with 38 people and 4 groups ctacmo abrentnall jperkins CulCog jlorent bertelsen Zephyrus fisherp michaelbarton dakelley lwaldron polivares brianb ucbcjbm jfr xingxu emptyhb renewang Yanno sdvillal druvus natstreet czeller guhjy RMGraze oannes vplagnol frohike grahamc shigepong ccr axelon ugengma amsantos rschulz dragonrez isimpson vertikalist Biostatistics Bioinformatics Regulomics_UCHSC BTS-PT-AS-CS
	LRpath: A logistic regression approach for identifying enriched biological groups in gene expression data [My Copy] Bioinformatics (27 November 2008), btn592. by Maureen A. Sartor, George D. Leikauf, Mario Medvedovic posted to gsea by zufar on 2009-09-22 17:23:44 as along with 8 people and 2 groups rdiaz jfr guhjy heliopais VGreiff dswan Zephyrus renatomilani Bioinformatics Roswell Cancer Crosstalk
	GeneChaser: identifying all biological and clinical conditions in which genes of interest are differentially expressed. [My Copy] BMC bioinformatics, Vol. 9, No. 1. (2008) by R. Chen, R. Mallelwar, A. Thosar, S. Venkatasubrahmanyam, A. J. Butte posted to repo by zufar on 2009-09-22 17:22:53 as along with 12 people and 2 groups daforerog TRHvidsten jfr ilyashl dswan renatomilani Zephyrus tny guhjy cgaugain barriot GeeSharpMinor Bioinformatics Roswell Cancer Crosstalk
	Key issues in conducting a meta-analysis of gene expression microarray datasets. [My Copy] PLoS medicine, Vol. 5, No. 9. (30 September 2008), e184. by Adaikalavan Ramasamy, Adrian Mondry, Chris C. Holmes, Douglas G. Altman posted to meta-analysis by zufar on 2009-09-22 17:09:39 as along with 11 people and 1 group greg frohike lwaldron daforerog Zephyrus shikin druvus guhjy aviad_work jfr ptrobajo Roswell Cancer Crosstalk
	Core Signaling Pathways in Human Pancreatic Cancers Revealed by Global Genomic Analyses [My Copy] Science (4 September 2008), 1164368. by Sian Jones, Xiaosong Zhang, D. Williams Parsons, et al.Jimmy C. Lin, Rebecca J. Leary, Philipp Angenendt, Parminder Mankoo, Hannah Carter, Hirohiko Kamiyama, Antonio Jimeno, Seung-Mo Hong, Baojin Fu, Ming-Tseh Lin, Eric S. Calhoun, Mihoko Kamiyama, Kimberly Walter, Tatiana Nikolskaya, Yuri Nikolsky, James Hartigan, Douglas R. Smith, Manuel Hidalgo, Steven D. Leach, Alison P. Klein, Elizabeth M. Jaffee, Michael Goggins, Anirban Maitra, Christine Iacobuzio-Donahue, James R. Eshleman, Scott E. Kern, Ralph H. Hruban, Rachel Karchin, Nickolas Papadopoulos, Giovanni Parmigiani, Bert Vogelstein, Victor E. Velculescu, Kenneth W. Kinzler posted to gwas by zufar on 2009-09-22 17:08:06 as along with 18 people and 3 groups jbhiatt dolchan wimufi jo_davies srp33 jfr whh98 roys cmzmasek thomaskelder fongkoh AlexanderPico SaraNasser renatomilani brianb shikin songpku giovenko ConklinLab GeneGo Roswell Cancer Crosstalk
	Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 102, No. 43. (25 October 2005), pp. 15545-15550. by Aravind Subramanian, Pablo Tamayo, Vamsi K. Mootha, et al.Sayan Mukherjee, Benjamin L. Ebert, Michael A. Gillette, Amanda Paulovich, Scott L. Pomeroy, Todd R. Golub, Eric S. Lander, Jill P. Mesirov posted to gsea by zufar on 2009-09-22 17:06:32 as along with 44 people and 4 groups miskar giovenko greg dolchan pattersonee mhamidi jperkins ptrobajo antonkratz yaredo tmmurali VGreiff daforerog paszkows ipark-kaist bertelsen ajbattle jessopher askrajiv idonaldson ihpark chrisamiller dragonrez jfr balajis maryee xwbcn hpiwowar aviad_work ealloza jdiggans jeremymiller frohike hawkeyehammer schuylrp natstreet heliopais shikin waghsk roys ellakat srp33 sgoetz AbnerCYH Bioinformatics BioinfoCIPF GeschwindLab Indigene
	Identifying differential correlation in gene/pathway combinations [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (18 November 2008), 488. by Rosemary Braun, Leslie Cope, Giovanni Parmigiani posted to diffefential_correlation by zufar on 2009-09-22 17:05:27 as along with 11 people dolchan dipenps jfr shikin mdstobbe imina rdiaz renatomilani lptolik barriot ptrobajo
	Text-mining of PubMed abstracts by natural language processing to create a public knowledge base on molecular mechanisms of bacterial enteropathogens [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 177. by Sam Zaremba, Mila R. Santacruz, Thomas Hampton, et al.Panna Shetty, Joel Fedorko, Jon Whitmore, John Greene, Nicole Perna, Jeremy Glasner, Guy Plunkett, Matthew Shaker, David Pot posted to nlp by zufar on 2009-09-22 10:02:26 as along with 10 people and 2 groups druvus behindtherabbit fgibson Effie kiekyon leemond31 nuin liblab barriot Gaetan NaCTeM Journal picks
	Disease signatures are robust across tissues and experiments [My Copy] Molecular Systems Biology, Vol. 5 (15 September 2009) by Joel T. Dudley, Robert Tibshirani, Tarangini Deshpande, Atul J. Butte posted to signature-genes by zufar on 2009-09-22 09:59:21 as along with 13 people tmmurali giovanni grahamc renatomilani ptrobajo jclau klo mingzhi ngehlenborg dswan winterschlaefer daforerog brianb
	Bayesian statistical methods for genetic association studies. [My Copy] Nature reviews. Genetics, Vol. 10, No. 10. (01 October 2009), pp. 681-690. by Matthew Stephens, David J. Balding posted to gwas by zufar on 2009-09-22 09:34:34 as along with 22 people and 1 group shikin heliopais Zephyrus nuin matjes pkonings fastjoe23 guhjy maren gregdavisfromnj natstreet TRHvidsten n00c lwaldron megraw rdiaz kimorley leliavski misonneh qayub daforerog druvus Journal picks
	An efficient method for identifying statistical interactors in gene association networks [My Copy] Biostat, Vol. 10, No. 4. (1 October 2009), pp. 706-718. by Alina Andrei, Christina Kendziorski posted to networks by zufar on 2009-09-21 18:09:19 as along with 2 people rdiaz lwaldron

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snp	35
gene-expression	27
breast-neoplasms	18
pattern-recognition	18
gwas	17
cluster-analysis	16
mutation	16
genotype	15
gsea	13
neoplasms	13
phenotype	13
neoplasm	12
tumor	12
bayes	11
cancer	10
meta-analysis	10
tumor-markers	10
affy	9
classification	9
haplotypes	9
signature-genes	9
neoplasms-genetics	8
prognosis	8
alleles	7
diagnosis	7
genetic-markers	7
leukemia	7
neoplasms-metabolism	7
review	7
fdr	6
glioblastoma	6
linear-models	6
neoplasm-genetics	6
neoplasms-diagnosis	6
network-modules	6
prostatic-neoplasms	6
snp-pathways	6
microarray	5
myeloid	5
normalization	5
quality-control	5
workflow	5
breast_cancer	4
clustering	4
cnv	4
colorectal-neoplasms	4
expression	4
feature-selection	4
haplotypes-genetics	4
mutation-genetics	4
network-cluster	4
nonparametric	4
regression-analysis	4
rna-genetics	4
biological-markers	3
brain-neoplasms	3
can_genes	3
carcinoma	3
differential_expression	3
false-discovery-rate	3
genechip	3
genetic-diseases	3
microarray-analysis	3
pathway-signature	3
potts	3
quantitative-trait	3
risk-factors	3
adenocarcinoma	2
alzheimer-disease	2
analysis-of-variance	2
cabig	2
classifiers	2
clusters	2
crohn-disease	2
diagnostic-tests	2
disease	2
disease-genetics	2
disease_risk	2
feature_selection	2
genotype-phenotype	2
mendeley	2
multiple-comparisons	2
network	2
networks	2
pathway-activity	2
pathway-eqtl	2
scale-free	2
signature-pathways	2
survival-analysis	2
validation	2
variable-selection	2
alternative_splicing	1
biclustering	1
bimodality	1
book	1
colon_cancer	1
copa	1
correlation	1
cross-study	1
cross-validation	1
data	1
dbgap	1
density-estimation	1
diffefential_correlation	1
dimension-reduction	1
disease_genetics	1
disease_prediction	1
dlda	1
empirical-bayes	1
eqtl	1
factor_analysis	1
friedman-test	1
fsnp	1
gene-fusion	1
gene-networks	1
glioma	1
graph-clustering	1
graph-partitioning	1
gsa	1
interactome	1
kappa	1
kinetic	1
lod-score	1
logistic-models	1
mcode	1
mode	1
model-selection	1
modularity	1
molecular-networks	1
molecular-structure	1
network_classification	1
network-comparison	1
network-evolution	1
network_inference	1
nlp	1
order-statistics	1
parkinson_disease	1
pathway	1
pathway-classification	1
pevzner	1
repo	1
sam-gs	1
selection-bias	1
sequencing	1
snp-phenotype	1
somatic_mutations	1
unimodality	1

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