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protein	364
influenza	256
structure	202
evolution	193
interaction	186
virus	158
network	135
prediction	110
rna	94
genome	77
yeast	61
domain	60
sequence	59
gene	54
complex	48
phylogeny	43
rnasep	34
transcription	34
polymerase	32
co-evolution	32
avian	30
binding	30
dynamics	29
mutation	28
genome-wide	27
folding	27
dna	26
bacterial	26
motif	23
expression	23
hemagglutinin	22
alignment	20
clustering	19
regulatory	19
human	19
site	19
modeling	19
eukaryota	17
antibody	17
regulation	16
function	15
genetic	15
fluorescent	14
design	14
synthetic	13
drug	13
residue	13
metabolism	12
epitope	12
bayesian	12
interface	11
immunity	11
pathway	10
microarray	10
algorithm	10
promoter	10
massspectrometry	9
replication	9
diversity	8
hiv	8
ecoli	8
phenotype	8
peptide	8
bioinformatics	7
review	7
computational	7
invivo	7
y2h	7
vaccine	7
systematic	6
system	6
specy	6
hostspecialization	6
chromatin	6
geneexpression	5
swine	5
prokaryote	5
insilico	5
mammal	5
annotation	5
phosphorylation	5
disease	5
homology	5
subunit	5
fret	5
substitution	5
selection	5
nmr	5
visualization	5
architecture	4
svm	4
em	4
localization	4
module	4
nuclear	4
divergence	4
antigen	4
rule	4
membrane	4
hierarchical	4
surface	4
proteomics	4
purification	4
coil	4
histone	4
assembly	4
microrna	4
genetics	4
ortholog	4
ncrna	4
experiment	4
genefamily	3
translation	3
biofuel	3
reassortment	3
np	3
ysd	3
methylation	3
profile	3
m2	3
science	3
deletion	3
cancer	3
immune	3
protocol	3
archaea	3
simulation	3
element	3
cellcycle	3
research	3
contact	3
secondary	3
neural	2
epistasis	2
ribozyme	2
phylogeography	2
primer	2
cooccurrence	2
information-theory	2
hub	2
bret	2
fitness	2
stability	2
chaperone	2
bootstrap	2
web	2
comparativegenomics	2
target	2
homologymodeling	2
likelihood	2
mi	2
database	2
bifc	2
technique	2
linker	2
accuracy	2
mp	2
ns	2
cloning	2
molecularrecognition	2
docking	2
model	2
chromosome	2
mhc	2
inhibition	2
mathematic	2
singlemolecule	2
endogenous	2
positiveselection	2
viability	2
presentation	2
positiveepistasis	1
cpg-island	1
sequencing	1
degradation	1
vesicle	1
emulation	1
tlr	1
coevolution	1
oral	1
sampling	1
compensatory	1
reverse-engineering	1
statistical	1
clade	1
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co-extinction	1
detection	1
nanoscale	1
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ribosome	1
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substrate_recognition	1
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text-mining	1
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oligonucleotide	1
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counter	1
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geneontology	1
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