zwang's library 1122 articles Export

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	Predicting transcription factor specificity with all-atom models. [My Copy] Nucleic acids research (1 October 2008) by Sahand Jamal J. Rahi, Peter Virnau, Leonid A A. Mirny, Mehran Kardar posted to dna interaction prediction protein structure by zwang on 2008-11-04 09:08:12 as along with 6 people Jporci chrn reyez maximilianh lptolik aalibes
	RNase P without RNA: Identification and Functional Reconstitution of the Human Mitochondrial tRNA Processing Enzyme [My Copy] cell posted to function human rna rnasep by zwang on 2008-11-03 10:11:25 as
	Protein co-evolution, co-adaptation and interactions [My Copy] The EMBO Journal posted to co-evolution interaction by zwang on 2008-10-28 13:41:44 as along with 1 person phoenixzxl
	Structure of the 30S translation initiation complex [My Copy] Nature (31 August 2008) by Angelita Simonetti, Stefano Marzi, Alexander G. Myasnikov, et al.Attilio Fabbretti, Marat Yusupov, Claudio O. Gualerzi, Bruno P. Klaholz posted to complex em protein structure by zwang on 2008-10-16 13:56:26 as
	Genome-wide search for yeast RNase P substrates reveals role in maturation of intron-encoded box C/D small nucleolar RNAs [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 34. (2008), pp. 12218-12223. by Daniel J. Coughlin, Jeffrey A. Pleiss, Scott C. Walker, Gregg B. Whitworth, David R. Engelke posted to rna rnasep yeast by zwang on 2008-08-27 14:32:26 as along with 1 person and 1 group stajich Mycology
	Predicting novel RNA-RNA interactions. [My Copy] Current opinion in structural biology (14 May 2008) by Irmtraud M M. Meyer posted to interaction prediction rna structure by zwang on 2008-06-16 03:49:12 as along with 2 people and 1 group Hosna marck beta
	Structural principles from large RNAs. [My Copy] Annual review of biophysics, Vol. 37, No. 1. (2008), pp. 445-464. by Stephen R. Holbrook posted to rna secondary structure by zwang on 2008-05-08 09:57:07 as along with 3 people balewis mhamada svozil
	Life without RNase P [My Copy] Nature, Vol. 453, No. 7191., pp. 120-123. by Lennart Randau, Imke Schröder, Dieter Söll posted to ecoli rnasep by zwang on 2008-05-05 14:15:41 as along with 4 people and 2 groups kinestetika neils stajich austin microbiology_nijmegen Mycology
	Ionic interactions between PRNA and P protein in Bacillus subtilis RNase P characterized using a magnetocapture-based assay [My Copy] RNA, Vol. 10, No. 10. (1 October 2004), pp. 1595-1608. by Jeremy J. Day-Storms, S. Niranjanakumari, Carol A. Fierke posted to bacterial interaction magnetic protein rna rnasep by zwang on 2008-03-21 07:55:58 as
	Characterization of RNase P from Thermotoga maritima [My Copy] Nucl. Acids Res., Vol. 29, No. 4. (15 February 2001), pp. 880-885. by Ralf Paul, Denis Lazarev, Sidney Altman posted to protein rna rnasep by zwang on 2008-03-21 07:55:05 as
	Structural inference of native and partially folded RNA by high-throughput contact mapping [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 11. (18 March 2008), pp. 4144-4149. by Rhiju Das, Madhuri Kudaravalli, Magdalena Jonikas, et al.Alain Laederach, Robert Fong, Jason P. Schwans, David Baker, Joseph A. Piccirilli, Russ B. Altman, Daniel Herschlag posted to contact folding rna structure by zwang on 2008-03-20 13:00:39 as along with 1 person and 1 group wsjames Oxford Virology
	A fast structural multiple alignment method for long RNA sequences [My Copy] BMC Bioinformatics, Vol. 9 (23 January 2008), 33. by Yasuo Tabei, Hisanori Kiryu, Taishin Kin, Kiyoshi Asai posted to alignment rna sequence structure by zwang on 2008-02-24 13:44:59 as along with 2 people Md_2007 mtagaya
	Detecting coevolution in and among protein domains. [My Copy] PLoS computational biology, Vol. 3, No. 11. (1 November 2007), e211. by Chen-Hsiang H. Yeang, David Haussler posted to co-evolution domain prediction protein by zwang on 2007-12-10 04:24:46 as along with 13 people and 1 group dfdong martainn balicea skhadar sobolevnrm niallhaslam hpaces mingzhi Ema phoenixzxl penpen926 friendpine pradiptaray baker-group
	High-precision mapping of protein protein interfaces: an integrated genetic strategy combining en masse mutagenesis and DNA-level parallel analysis on a yeast two-hybrid platform. [My Copy] Nucleic Acids Res (15 August 2007) by Maria Pajunen, Hilkka Turakainen, Eini Poussu, Johan Peränen, Mauno Vihinen, Harri Savilahti posted to interaction interface mutation protein yeast by zwang on 2007-09-17 09:52:27 as along with 2 people Terkko yeastyboy
	Specific binding of a Pop6/Pop7 heterodimer to the P3 stem of the yeast RNase MRP and RNase P RNAs [My Copy] RNA (23 August 2007), rna.654407. by Anna Perederina, Olga Esakova, Hasan Koc, Mark E. Schmitt, Andrey S. Krasilnikov posted to binding domain rna rnasep site yeast by zwang on 2007-09-02 07:31:22 as
	High-throughput identification of Interacting Protein-Protein Binding Sites [My Copy] BMC Bioinformatics, Vol. 8 (27 June 2007), 223. by Jo-Lan Chung, Wei Wang, Philip E. Bourne posted to binding interaction prediction protein site svm by zwang on 2007-08-27 08:57:42 as along with 3 people bicko grahamc Evangelia
	Binding Site Graphs: A New Graph Theoretical Framework for Prediction of Transcription Factor Binding Sites [My Copy] PLoS Computational Biology, Vol. 3, No. 5. (1 May 2007), e90. by Timothy E. Reddy, Charles Delisi, Boris E. Shakhnovich posted to binding prediction transcription by zwang on 2007-05-12 10:40:13 as
	Human H1 promoter expressed short hairpin RNAs (shRNAs) suppress avian influenza virus replication in chicken CH-SAH and canine MDCK cells [My Copy] Antiviral Research, Vol. 84, No. 2. (06 November 2009), pp. 159-167. by Arusyak Abrahamyan, Éva Nagy, Serguei P. Golovan posted to virus rna replication inhibitor influenza human by zwang on 2009-10-10 09:32:54 as
	The mouse Pol I terminator is more efficient than the hepatitis delta virus ribozyme in generating influenza-virus-like RNAs with precise 3′ ends in a plasmid-only-based virus rescue system [My Copy] Archives of Virology by Liqiang Feng, Feng Li, Xuehua Zheng, et al.Weiqi Pan, Kai Zhou, Yichu Liu, Hongxuan He, Ling Chen posted to influenza promoter rna terminator by zwang on 2009-06-17 02:25:16 as
	A Complicated Message: Identification of a Novel PB1-Related Protein Translated from Influenza A Virus Segment 2 mRNA [My Copy] J. Virol., Vol. 83, No. 16. (15 August 2009), pp. 8021-8031. by Helen M. Wise, Agnes Foeglein, Jiechao Sun, et al.Rosa M. Dalton, Sheetal Patel, Wendy Howard, Emma C. Anderson, Wendy S. Barclay, Paul Digard posted to gene influenza protein by zwang on 2009-06-08 04:26:22 as along with 2 people dfdong friendpine
	Small interfering RNA targeting m2 gene induces effective and long term inhibition of influenza a virus replication. [My Copy] PLoS ONE, Vol. 4, No. 5. (2009) by H. Y. Sui, G. Y. Zhao, J. D. Huang, D. Y. Jin, K. Y. Yuen, B. J. Zheng posted to drug influenza replication virus by zwang on 2009-06-02 12:24:47 as along with 1 person friendpine
	Large-scale analysis of Influenza A virus sequences reveals potential drug-target sites of NS proteins. [My Copy] The Journal of general virology (6 May 2009) by Vivek Darapaneni, Varun K K. Prabhaker, Andreas Kukol posted to drug influenza ns by zwang on 2009-05-19 08:50:02 as along with 1 person friendpine
	Evolution of Complex RNA Polymerases: The Complete Archaeal RNA Polymerase Structure [My Copy] PLoS Biology, Vol. 7, No. 5. (1 May 2009), e102. by Yakov Korkhin, Ulug M. Unligil, Otis Littlefield, et al.Pamlea J. Nelson, David I. Stuart, Paul B. Sigler, Stephen D. Bell, Nicola G. Abrescia posted to complex evolution polymerase rna structure by zwang on 2009-05-06 05:21:55 as along with 2 people inesdesantiago yves_cite
	Crystallization and X-ray diffraction analysis of the RNA primer/promoter-binding domain of influenza A virus RNA-dependent RNA polymerase PB2 [My Copy] Acta Crystallographica Section F: Structural Biology and Crystallization Communications, Vol. 65, No. 2. (February 2009), pp. 144-146. by T. Kuzuhara, D. Kise, H. Yoshida, et al.T. Horita, Y. Murazaki, H. Utsunomiya, H. Tsuge posted to influenza polymerase promoter structure virus by zwang on 2009-02-09 01:37:07 as
	Crystal structure of an avian influenza polymerase PAN reveals an endonuclease active site [My Copy] Nature (04 February 2009) by Puwei Yuan, Mark Bartlam, Zhiyong Lou, et al.Shoudeng Chen, Jie Zhou, Xiaojing He, Zongyang Lv, Ruowen Ge, Xuemei Li, Tao Deng, Ervin Fodor, Zihe Rao, Yingfang Liu posted to influenza polymerase structure virus by zwang on 2009-02-09 01:36:19 as
	Nucleotide sequence requirements at the 5' end of the influenza A virus M RNA segment for efficient virus replication [My Copy] J. Virol. (21 January 2009), JVI.02513-08. by Makoto Ozawa, Junko Maeda, Kiyoko Iwatsuki-Horimoto, et al.Shinji Watanabe, Hideo Goto, Taisuke Horimoto, Yoshihiro Kawaoka posted to influenza replication rna sequence virus by zwang on 2009-02-06 08:30:44 as
	The influenza A virus polymerase is an integral component of the NS1A protein:CPSF30 complex in infected cells [My Copy] J. Virol. (3 December 2008), JVI.01491-08. by Rei-Lin Kuo, Robert M. Krug posted to complex influenza polymerase protein virus by zwang on 2009-02-05 02:52:37 as
	PB2 Protein of a Highly Pathogenic Avian Influenza Virus Strain A/chicken/Yamaguchi/7/2004 (H5N1) Determines Its Replication Potential in Pigs [My Copy] J. Virol., Vol. 83, No. 4. (15 February 2009), pp. 1572-1578. by Rashid Manzoor, Yoshihiro Sakoda, Naoki Nomura, et al.Yoshimi Tsuda, Hiroichi Ozaki, Masatoshi Okamatsu, Hiroshi Kida posted to hostspecialization influenza polymerase protein virus by zwang on 2009-02-05 02:49:33 as along with 2 people friendpine mrphospho
	Joint Evolutionary Trees: A Large-Scale Method To Predict Protein Interfaces Based on Sequence Sampling [My Copy] PLoS Comput Biol, Vol. 5, No. 1. (23 January 2009), e1000267. by Stefan Engelen, Ladislas A. Trojan, Sophie Sacquin-Mora, Richard Lavery, Alessandra Carbone posted to interaction interface phylogeny prediction by zwang on 2009-02-05 01:57:13 as along with 3 people phoenixzxl kshameer druvus
	Structural Basis of the Influenza A Virus RNA Polymerase PB2 RNA-binding Domain Containing the Pathogenicity-determinant Lysine 627 Residue [My Copy] Journal of Biological Chemistry, Vol. 284, No. 11. (13 March 2009), pp. 6855-6860. by Takashi Kuzuhara, Daisuke Kise, Hiroko Yoshida, et al.Takahiro Horita, Yoshimi Murazaki, Akie Nishimura, Noriko Echigo, Hiroko Utsunomiya, Hideaki Tsuge posted to binding domain influenza polymerase rna virus by zwang on 2009-02-05 01:43:08 as along with 1 person dfdong
	Accurate SHAPE-directed RNA structure determination [My Copy] by Katherine posted to rna structure by zwang on 2009-01-09 09:07:32 as
	Identification of direct residue contacts in protein–protein interaction by message passing [My Copy] posted to interaction protein residue by zwang on 2009-01-07 04:28:46 as
	X-ray structure of NS1 from a highly pathogenic H5N1 influenza virus [My Copy] Nature (05 November 2008) by Zachary A. Bornholdt, Venkataram B. V. Prasad posted to influenza protein structure by zwang on 2008-12-30 06:02:11 as
	Structure of influenza hemagglutinin in complex with an inhibitor of membrane fusion [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 46. (18 November 2008), pp. 17736-17741. by Rupert J. Russell, Philip S. Kerry, David J. Stevens, et al.David A. Steinhauer, Stephen R. Martin, Steven J. Gamblin, John J. Skehel posted to complex influenza structure by zwang on 2008-12-19 08:11:05 as
	Minor changes largely restore catalytic activity of archaeal RNase P RNA from Methanothermobacter thermoautotrophicus. [My Copy] Nucleic acids research (26 November 2008) by Dan Li, Dagmar K K. Willkomm, Roland K K. Hartmann posted to archaea rna rnasep by zwang on 2008-12-01 04:13:56 as
	Characterization of domain-peptide interaction interface: a generic structure-based model to decipher the binding specificity of SH3 domains [My Copy] Mol Cell Proteomics (20 November 2008), M800450-MCP200. by Tingjun Hou, Zheng Xu, Wei Zhang, et al.William A. Mclaughlin, David A. Case, Yang Xu, Wei Wang posted to binding domain interaction structure by zwang on 2008-11-24 09:01:38 as along with 2 people kgutwin phoenixzxl
	Eukaryotic RNase PRole of RNA and Protein Subunits of a Primordial Catalytic Ribonucleoprotein in RNA-Based Catalysis [My Copy] Molecular Cell, Vol. 12, No. 4. (October 2003), pp. 925-935. by H. Mann posted to eukaryota human protein rna rnasep by zwang on 2008-11-12 02:15:50 as
	Structure Prediction of Domain Insertion Proteins from Structures of Individual Domains [My Copy] Structure, Vol. 16, No. 4. (8 April 2008), pp. 513-527. by Monica Berrondo, Marc Ostermeier, Jeffrey J. Gray posted to domain peptide prediction structure by zwang on 2008-11-12 01:40:59 as along with 2 people raik choonpeng
	Genome-wide nucleotide-level mammalian ancestor reconstruction [My Copy] Genome Research, Vol. 18, 1829. posted to dna evolution genome phylogeny by zwang on 2008-11-03 10:50:45 as
	Discarding Functional Residues from the Substitution Table Improves Predictions of Active Sites within Three-Dimensional Structures [My Copy] PLoS Comput Biol, Vol. 4, No. 10. (3 October 2008), e1000179. by Sungsam Gong, Tom L. Blundell posted to prediction residue structure substitution by zwang on 2008-11-03 09:15:32 as along with 7 people sebk ssgong gjuggler joseph_x_zhou bicko massivemayhem reyez
	Seeking Membranes: Positive-Strand RNA Virus Replication Complexes [My Copy] PLoS Biology, Vol. 6, No. 10. (1 October 2008), e270. by Mark R. Denison posted to complex rna virus by zwang on 2008-11-03 09:09:36 as
	A Specificity Map for the PDZ Domain Family [My Copy] PLoS Biology, Vol. 6, No. 9. (1 September 2008), e239. by Raffi Tonikian, Yingnan Zhang, Stephen L. Sazinsky, et al.Bridget Currell, Jung-Hua Yeh, Boris Reva, Heike A. Held, Brent A. Appleton, Marie Evangelista, Yan Wu, Xiaofeng Xin, Andrew C. Chan, Somasekar Seshagiri, Laurence A. Lasky, Chris Sander, Charles Boone, Gary D. Bader, Sachdev S. Sidhu posted to domain interaction protein by zwang on 2008-10-20 05:11:28 as along with 6 people and 3 groups kgutwin balicea grahamc markchen cabbagesofdoom barry structural_bioinformatics McCammon Bioinformatics
	Probabilistic Phylogenetic Inference with Insertions and Deletions [My Copy] PLoS Comput Biol, Vol. 4, No. 9. (2008), e1000172. by Elena Rivas, Sean R. Eddy posted to evolution phylogeny by zwang on 2008-10-20 01:59:53 as along with 11 people and 1 group BioNica mhamada treangen pradiptaray nuin timflutre druvus djkt aprasad gjuggler emptyhb iSEEM
	Global Analysis of Host-Pathogen Interactions that Regulate Early-Stage HIV-1 Replication [My Copy] posted to clustering interaction protein by zwang on 2008-10-15 09:34:10 as
	High-Quality Binary Protein Interaction Map of the Yeast Interactome Network [My Copy] Science, Vol. 322, No. 5898. (3 October 2008), pp. 104-110. by Haiyuan Yu, Pascal Braun, Muhammed A. Yildirim, et al.Irma Lemmens, Kavitha Venkatesan, Julie Sahalie, Tomoko Hirozane-Kishikawa, Fana Gebreab, Na Li, Nicolas Simonis, Tong Hao, Jean-Francois Rual, Amelie Dricot, Alexei Vazquez, Ryan R. Murray, Christophe Simon, Leah Tardivo, Stanley Tam, Nenad Svrzikapa, Changyu Fan, Anne-Sophie de Smet, Adriana Motyl, Michael E. Hudson, Juyong Park, Xiaofeng Xin, Michael E. Cusick, Troy Moore, Charlie Boone, Michael Snyder, Frederick P. Roth, Albert-Laszlo Barabasi, Jan Tavernier, David E. Hill, Marc Vidal posted to interaction network protein yeast by zwang on 2008-10-15 08:39:36 as along with 26 people and 1 group mgomes nzm pauldobson cabbagezs mariap3636 semin roys phoenixzxl kintoki jbhiatt elenaz jfr ocs cerca ptrobajo carlk gracio reyez mdperry dullhunk Petersarkies grahamc yeastyboy guhjy maralena neils BenosLab
	RNA Structure: Reading the Ribosome [My Copy] Science, Vol. 309, No. 5740. (02 September 2005), pp. 1508-1514. by Harry F. Noller posted to rna secondary structure by zwang on 2008-10-09 05:09:34 as along with 3 people and 2 groups dayjm marcius jarasch BioinfoCIPF SGU-CIPF
	Global investigation of protein-protein interactions in yeast Saccharomyces cerevisiae using re-occurring short polypeptide sequences. [My Copy] Nucleic acids research, Vol. 36, No. 13. (27 August 2008), pp. 4286-4294. by S. Pitre, C. North, M. Alamgir, et al.M. Jessulat, A. Chan, X. Luo, J. R. Green, M. Dumontier, F. Dehne, A. Golshani posted to interaction protein y2h yeast by zwang on 2008-10-07 11:31:21 as along with 6 people kiekyon brianb neils pansapiens renatomilani guhjy
	Cavities and Atomic Packing in Protein Structures and Interfaces [My Copy] PLoS Comput Biol, Vol. 4, No. 9. (2008), e1000188. by Shrihari Sonavane, Pinak Chakrabarti posted to interface protein structure by zwang on 2008-10-07 11:17:40 as along with 1 person raik
	Identification and Analysis of Co-Occurrence Networks with NetCutter [My Copy] PLOS ONE, Vol. 3, No. 9. by Heiko posted to cooccurrence network by zwang on 2008-09-12 03:00:47 as
	Predicting PDZ domain–peptide interactions from primary sequences [My Copy] Nature Biotechnology, Vol. 26, No. 9. (17 August 2008), pp. 1041-1045. by Jiunn R. Chen, Bryan H. Chang, John E. Allen, Michael A. Stiffler, Gavin Macbeath posted to domain interaction prediction protein by zwang on 2008-09-10 07:31:56 as along with 5 people Evangelia yzlab phoenixzxl guhjy cabbagesofdoom

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protein	358
influenza	248
structure	197
evolution	189
interaction	182
virus	155
network	132
prediction	109
rna	89
genome	77
domain	60
yeast	60
sequence	59
gene	54
complex	47
phylogeny	43
transcription	34
rnasep	33
co-evolution	32
avian	30
binding	30
dynamics	29
polymerase	29
mutation	28
folding	27
genome-wide	27
bacterial	26
dna	26
expression	23
motif	23
hemagglutinin	21
alignment	20
clustering	19
modeling	19
regulatory	19
site	19
human	18
antibody	17
eukaryota	17
regulation	16
function	15
genetic	15
design	14
fluorescent	14
drug	13
residue	13
synthetic	13
bayesian	12
metabolism	12
epitope	11
immunity	11
interface	10
microarray	10
pathway	10
promoter	10
algorithm	9
massspectrometry	9
diversity	8
ecoli	8
hiv	8
peptide	8
phenotype	8
bioinformatics	7
computational	7
invivo	7
replication	7
review	7
vaccine	7
y2h	7
chromatin	6
hostspecialization	6
specy	6
system	6
systematic	6
annotation	5
disease	5
fret	5
geneexpression	5
homology	5
insilico	5
mammal	5
nmr	5
phosphorylation	5
prokaryote	5
selection	5
substitution	5
subunit	5
swine	5
visualization	5
antigen	4
architecture	4
assembly	4
divergence	4
em	4
experiment	4
genetics	4
hierarchical	4
histone	4
localization	4
membrane	4
microrna	4
module	4
ncrna	4
nuclear	4
ortholog	4
proteomics	4
purification	4
rule	4
surface	4
svm	4
archaea	3
biofuel	3
cancer	3
cellcycle	3
coil	3
contact	3
deletion	3
element	3
genefamily	3
immune	3
m2	3
methylation	3
np	3
profile	3
protocol	3
reassortment	3
research	3
science	3
secondary	3
simulation	3
translation	3
ysd	3
accuracy	2
bifc	2
bootstrap	2
bret	2
chaperone	2
chromosome	2
cloning	2
comparativegenomics	2
cooccurrence	2
database	2
docking	2
endogenous	2
epistasis	2
fitness	2
homologymodeling	2
hub	2
information-theory	2
inhibition	2
likelihood	2
linker	2
mathematic	2
mhc	2
mi	2
molecularrecognition	2
mp	2
neural	2
ns	2
phylogeography	2
positiveselection	2
presentation	2
primer	2
ribozyme	2
singlemolecule	2
stability	2
target	2
technique	2
viability	2
web	2
bsi	1
clade	1
coevolution	1
co-extinction	1
collaboration	1
compensatory	1
confidence	1
counter	1
cpg-island	1
culture	1
degradation	1
detection	1
differentiation	1
duplication	1
ecology	1
emulation	1
enzyme	1
epigenetics	1
fuck	1
geneontology	1
generegulation	1
hgt	1
hla	1
hmm	1
immunohistochemistry	1
inhibitor	1
integration	1
invitro	1
lgt	1
magnetic	1
marker	1
model	1
morphological	1
mrp	1
nanopore	1
nanoscale	1
nature	1
neoselection	1
noise	1
oligonucleotide	1
oral	1
pathobiology	1
pca	1
plant	1
positiveepistasis	1
protection	1
qtl	1
reliability	1
reverse-engineering	1
ribosome	1
sampling	1
sequencing	1
similarity	1
singlecell	1
sites	1
social	1
speciation	1
statistical	1
strain	1
substrate_recognition	1
tag	1
tap	1
terminator	1
text-mining	1
theory	1
threading	1
tissue	1
tlr	1
transmembrane	1
trna	1
vesicle	1
video	1

zwang's library 1122 articles Export

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