zwang's binding [30 articles] Export

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	Free energy simulations reveal a double mutant avian H5N1 virus hemagglutinin with altered receptor binding specificity [My Copy] Journal of Computational Chemistry, Vol. 30, No. 11. (27 August 2009), pp. 1654-1663. by Payel Das, Jingyuan Li, Ajay K. Royyuru, Ruhong Zhou posted to binding hemagglutinin virus by zwang on 2009-05-04 01:54:50 as along with 3 people RamuAnandakrishnan oceanwind idoerg
	Enhanced Exposure of the CD4-Binding Site to Neutralizing Antibodies by Structural Design of a Membrane-Anchored Human Immunodeficiency Virus Type 1 gp120 Domain [My Copy] J. Virol., Vol. 83, No. 10. (15 May 2009), pp. 5077-5086. by Lan Wu, Tongqing Zhou, Zhi-Yong Yang, et al.Krisha Svehla, Sijy O'Dell, Mark K. Louder, Ling Xu, John R. Mascola, Dennis R. Burton, James A. Hoxie, Robert W. Doms, Peter D. Kwong, Gary J. Nabel posted to binding domain influenza structure by zwang on 2009-04-22 10:23:42 as
	Distinct glycan topology for avian and human sialopentasaccharide receptor analogues upon binding different hemagglutinins: a molecular dynamics perspective. [My Copy] Journal of molecular biology, Vol. 387, No. 2. (27 March 2009), pp. 465-491. by D. Xu, E. I. Newhouse, R. E. Amaro, et al.H. C. Pao, L. S. Cheng, P. R. Markwick, J. A. McCammon, W. W. Li, P. W. Arzberger posted to avian binding hemagglutinin by zwang on 2009-04-13 04:06:42 as along with 3 people phoenixzxl oceanwind friendpine
	Possibility of Mutation Prediction of Influenza Hemagglutinin by Combination of Hemadsorption Experiment and Quantum Chemical Calculation for Antibody Binding. [My Copy] The journal of physical chemistry. B (26 March 2009) by Kazutomo Takematsu, Kaori Fukuzawa, Katsumi Omagari, et al.Setsuko Nakajima, Katsuhisa Nakajima, Yuji Mochizuki, Tatsuya Nakano, Hirofumi Watanabe, Shigenori Tanaka posted to antibody binding hemagglutinin influenza prediction by zwang on 2009-03-31 09:29:41 as
	The protein-small-molecule database, a non-redundant structural resource for the analysis of protein-ligand binding [My Copy] Bioinformatics, Vol. 25, No. 5. (1 March 2009), pp. 615-620. by Izhar Wallach, Ryan Lilien posted to binding protein structure by zwang on 2009-03-11 01:16:05 as along with 5 people ucbcjbm reyez carlosjavierna pauldobson apaydin
	Predicting RNA-binding sites of proteins using support vector machines and evolutionary information [My Copy] BMC Bioinformatics, Vol. 9, No. Suppl 12. (2008), S6. by Cheng W. Cheng, Emily Su, Jenn K. Hwang, Ting Y. Sung, Wen L. Hsu posted to binding evolution prediction protein site svm by zwang on 2009-03-05 02:03:52 as along with 3 people balewis iaolier phoenixzxl
	Common physical basis of macromolecule-binding sites in proteins. [My Copy] Nucleic acids research (6 November 2008) by Yao Chi C. Chen, Carmay Lim posted to binding protein site by zwang on 2009-02-24 07:45:27 as along with 3 people lptolik reyez markchen
	Role of sialic acid binding specificity of the 1918 influenza virus hemagglutinin protein in virulence and pathogenesis in mice [My Copy] J. Virol. (11 February 2009), JVI.02596-08. by Li Qi, John C. Kash, Vivien G. Dugan, et al.Ruixue Wang, Guozhong Jin, Robert E. Cunningham, Jeffery K. Taubenberger posted to binding hemagglutinin influenza virus by zwang on 2009-02-16 03:11:54 as
	Structural Basis of the Influenza A Virus RNA Polymerase PB2 RNA-binding Domain Containing the Pathogenicity-determinant Lysine 627 Residue [My Copy] Journal of Biological Chemistry, Vol. 284, No. 11. (13 March 2009), pp. 6855-6860. by Takashi Kuzuhara, Daisuke Kise, Hiroko Yoshida, et al.Takahiro Horita, Yoshimi Murazaki, Akie Nishimura, Noriko Echigo, Hiroko Utsunomiya, Hideaki Tsuge posted to binding domain influenza polymerase rna virus by zwang on 2009-02-05 01:43:08 as along with 1 person dfdong
	Structure and Functional Role of Dynein's Microtubule-Binding Domain [My Copy] Science, Vol. 322, No. 5908. (12 December 2008), pp. 1691-1695. by Andrew P. Carter, Joan E. Garbarino, Elizabeth M. Wilson-Kubalek, et al.Wesley E. Shipley, Carol Cho, Ronald A. Milligan, Ronald D. Vale, I. R. Gibbons posted to binding domain structure by zwang on 2009-01-09 08:57:15 as along with 4 people ClaireFBBurns cactus hsekiguc kshundyak
	Characterization of domain-peptide interaction interface: a generic structure-based model to decipher the binding specificity of SH3 domains [My Copy] Mol Cell Proteomics (20 November 2008), M800450-MCP200. by Tingjun Hou, Zheng Xu, Wei Zhang, et al.William A. Mclaughlin, David A. Case, Yang Xu, Wei Wang posted to binding domain interaction structure by zwang on 2008-11-24 09:01:38 as along with 2 people kgutwin phoenixzxl
	Diverse RNA-Binding Proteins Interact with Functionally Related Sets of RNAs, Suggesting an Extensive Regulatory System [My Copy] PLoS Biol, Vol. 6, No. 10. (28 October 2008), e255. by Daniel J. Hogan, Daniel P. Riordan, André P. Gerber, Daniel Herschlag, Patrick O. Brown posted to binding interaction protein rna by zwang on 2008-11-03 09:12:42 as along with 5 people and 1 group leemond31 kieran101 reyez stajich djkt Mycology
	Classifying RNA-Binding Proteins Based on Electrostatic Properties [My Copy] PLoS Comput Biol, Vol. 4, No. 8. (2008), e1000146. by Shula Shazman, Yael Mandel-Gutfreund posted to binding protein rna by zwang on 2008-08-30 04:00:30 as along with 1 person Ema
	Energy-dependent fitness: A quantitative model for the evolution of yeast transcription factor binding sites [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 34. (26 August 2008), pp. 12376-12381. by Ville Mustonen, Justin Kinney, Curtis G. Callan, Michael LÃ¤ssig posted to binding evolution site transcription by zwang on 2008-08-27 14:31:44 as along with 5 people lusk marck emptyhb bmajoros bpcusack
	InSite: a computational method for identifying protein-protein interaction binding sites on a proteome-wide scale [My Copy] Genome Biology, Vol. 8 (14 September 2007), R192. by Haidong Wang, Eran Segal, Asa Ben-Hur, Qianru Li, Marc Vidal, Daphne Koller posted to binding interaction prediction protein sites by zwang on 2008-08-22 09:47:16 as along with 3 people Jporci cjeans carlk
	Dynamic energy landscape view of coupled binding and protein conformational change: Induced-fit versus population-shift mechanisms [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 32. (12 August 2008), pp. 11182-11187. by Kei-ichi Okazaki, Shoji Takada posted to binding protein structure by zwang on 2008-08-14 07:25:41 as along with 8 people and 2 groups oteri bmduggan xdeupi okapi aqeel raik ruvido barry structural_bioinformatics McCammon
	Rational design of a novel calcium-binding site adjacent to the ligand-binding site on CD2 increases its CD48 affinity [My Copy] Protein Sci, Vol. 17, No. 3. (1 March 2008), pp. 439-449. by Lisa M. Jones, Wei Yang, Anna W. Maniccia, Alice Harrison, Anton P. van der Merwe, Jenny J. Yang posted to binding design immunity site by zwang on 2008-02-22 12:51:20 as
	A threading-based method (FINDSITE) for ligand-binding site prediction and functional annotation [My Copy] Proceedings of the National Academy of Sciences (28 December 2007), 0707684105. by Michal Brylinski, Jeffrey Skolnick posted to annotation binding prediction site structure threading by zwang on 2008-01-10 01:30:18 as along with 2 people iaolier cjeans
	A Nucleosome-Guided Map of Transcription Factor Binding Sites in Yeast [My Copy] PLoS Computational Biology, Vol. 3, No. 11. (1 November 2007), e215. by Leelavati Narlikar, Raluca Gordân, Alexander J. Hartemink posted to binding site transcription yeast by zwang on 2007-12-10 04:30:58 as along with 5 people TRHvidsten aalibes nklee maximilianh megraw
	The Modular Organization of Domain Structures: Insights into Protein–Protein Binding [My Copy] PLoS Computational Biology, Vol. 3, No. 12. (1 December 2007), e239. by Del, Pablo Carbonell posted to binding domain protein structure by zwang on 2007-12-08 08:54:46 as along with 9 people bicko chad_davis choonpeng grahamc cjeans niallhaslam biehl marti carlk
	Kinetic evidence for a ligand-binding-induced conformational transition in the T cell receptor [My Copy] Proceedings of the National Academy of Sciences, Vol. 104, No. 42. (16 October 2007), pp. 16639-16644. by Dmitry M. Gakamsky, Erwin Lewitzki, Ernst Grell, et al.Xavier Saulquin, Bernard Malissen, Felix Montero-Julian, Marc Bonneville, Israel Pecht posted to binding protein purification structure by zwang on 2007-10-22 05:49:11 as
	Specific binding of a Pop6/Pop7 heterodimer to the P3 stem of the yeast RNase MRP and RNase P RNAs [My Copy] RNA (23 August 2007), rna.654407. by Anna Perederina, Olga Esakova, Hasan Koc, Mark E. Schmitt, Andrey S. Krasilnikov posted to binding domain rna rnasep site yeast by zwang on 2007-09-02 07:31:22 as
	Evolution of Function in the "Two Dinucleotide Binding Domains" Flavoproteins [My Copy] PLoS Comput Biol, Vol. 3, No. 7. (20 July 2007), e121. by Sunil Ojha, Elaine C. Meng, Patricia C. Babbitt posted to binding domain evolution interaction protein site by zwang on 2007-08-29 02:31:54 as along with 5 people and 2 groups anuragsethi pradiptaray barry Einat mdimon structural_bioinformatics Bioinformatics
	High-throughput identification of Interacting Protein-Protein Binding Sites [My Copy] BMC Bioinformatics, Vol. 8 (27 June 2007), 223. by Jo-Lan Chung, Wei Wang, Philip E. Bourne posted to binding interaction prediction protein site svm by zwang on 2007-08-27 08:57:42 as along with 3 people bicko grahamc Evangelia
	An Approach to Predict Transcription Factor DNA Binding Site Specificity Based upon Gene and Transcription Factor Functional Categorization [My Copy] Bioinformatics (10 July 2007), btm348. by Ziliang Qian, Lingyi Lu, Xiaojun Liu, Yu-Dong Cai, Yixue Li posted to binding dna gene prediction site transcription by zwang on 2007-08-15 03:43:07 as along with 2 people druvus xili03
	Divergence of Transcription Factor Binding Sites Across Related Yeast Species [My Copy] Science, Vol. 317, No. 5839. (10 August 2007), pp. 815-819. by Anthony R. Borneman, Tara A. Gianoulis, Zhengdong D. Zhang, et al.Haiyuan Yu, Joel Rozowsky, Michael R. Seringhaus, Lu Y. Wang, Mark Gerstein, Michael Snyder posted to binding divergence site transcription yeast by zwang on 2007-08-13 07:21:50 as along with 22 people and 2 groups pradiptaray gdb fenghezi dbensasson caseybrown bryankr aalibes chad_davis dpollard djkt mikaelhuss lusk cjeans sujaikumar GustavoLacerda Jporci maximilianh cisevol njcitulike emptyhb nklee anka EisenLab cis-regulatory-evolution
	PDZ Domain Binding Selectivity Is Optimized Across the Mouse Proteome [My Copy] Science, Vol. 317, No. 5836. (20 July 2007), pp. 364-369. by Michael A. Stiffler, Jiunn R. Chen, Viara P. Grantcharova, et al.Ying Lei, Daniel Fuchs, John E. Allen, Lioudmila A. Zaslavskaia, Gavin Macbeath posted to binding domain genome interaction proteomics by zwang on 2007-07-23 07:12:01 as along with 2 people carlk phoenixzxl
	Frequent gain and loss of functional transcription factor binding sites. [My Copy] PLoS computational biology, Vol. 3, No. 5. (1 May 2007), e99. by Scott W. Doniger, Justin C. Fay posted to binding evolution site transcription by zwang on 2007-05-26 04:59:51 as along with 12 people and 2 groups roys fenghezi lusk JustinCrocker pradiptaray brant dpollard sebastien_vigneau maximilianh cisevol xili03 emptyhb EisenLab cis-regulatory-evolution
	Binding Site Graphs: A New Graph Theoretical Framework for Prediction of Transcription Factor Binding Sites [My Copy] PLoS Computational Biology, Vol. 3, No. 5. (1 May 2007), e90. by Timothy E. Reddy, Charles Delisi, Boris E. Shakhnovich posted to binding prediction transcription by zwang on 2007-05-12 10:40:13 as
	Exploiting residue-level and profile-level interface propensities for usage in binding sites prediction of proteins [My Copy] BMC Bioinformatics, Vol. 8 (05 May 2007), 147. by Qiwen Dong, Xiaolong Wang, Lei Lin, Yi Guan posted to binding interface prediction profile protein residue by zwang on 2007-05-06 09:28:10 as along with 4 people iaolier nickolay bicko marti

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protein	358
influenza	248
structure	197
evolution	189
interaction	182
virus	155
network	132
prediction	109
rna	89
genome	77
domain	60
yeast	60
sequence	59
gene	54
complex	47
phylogeny	43
transcription	34
rnasep	33
co-evolution	32
avian	30
binding	30
dynamics	29
polymerase	29
mutation	28
folding	27
genome-wide	27
bacterial	26
dna	26
expression	23
motif	23
hemagglutinin	21
alignment	20
clustering	19
modeling	19
regulatory	19
site	19
human	18
antibody	17
eukaryota	17
regulation	16
function	15
genetic	15
design	14
fluorescent	14
drug	13
residue	13
synthetic	13
bayesian	12
metabolism	12
epitope	11
immunity	11
interface	10
microarray	10
pathway	10
promoter	10
algorithm	9
massspectrometry	9
diversity	8
ecoli	8
hiv	8
peptide	8
phenotype	8
bioinformatics	7
computational	7
invivo	7
replication	7
review	7
vaccine	7
y2h	7
chromatin	6
hostspecialization	6
specy	6
system	6
systematic	6
annotation	5
disease	5
fret	5
geneexpression	5
homology	5
insilico	5
mammal	5
nmr	5
phosphorylation	5
prokaryote	5
selection	5
substitution	5
subunit	5
swine	5
visualization	5
antigen	4
architecture	4
assembly	4
divergence	4
em	4
experiment	4
genetics	4
hierarchical	4
histone	4
localization	4
membrane	4
microrna	4
module	4
ncrna	4
nuclear	4
ortholog	4
proteomics	4
purification	4
rule	4
surface	4
svm	4
archaea	3
biofuel	3
cancer	3
cellcycle	3
coil	3
contact	3
deletion	3
element	3
genefamily	3
immune	3
m2	3
methylation	3
np	3
profile	3
protocol	3
reassortment	3
research	3
science	3
secondary	3
simulation	3
translation	3
ysd	3
accuracy	2
bifc	2
bootstrap	2
bret	2
chaperone	2
chromosome	2
cloning	2
comparativegenomics	2
cooccurrence	2
database	2
docking	2
endogenous	2
epistasis	2
fitness	2
homologymodeling	2
hub	2
information-theory	2
inhibition	2
likelihood	2
linker	2
mathematic	2
mhc	2
mi	2
molecularrecognition	2
mp	2
neural	2
ns	2
phylogeography	2
positiveselection	2
presentation	2
primer	2
ribozyme	2
singlemolecule	2
stability	2
target	2
technique	2
viability	2
web	2
bsi	1
clade	1
coevolution	1
co-extinction	1
collaboration	1
compensatory	1
confidence	1
counter	1
cpg-island	1
culture	1
degradation	1
detection	1
differentiation	1
duplication	1
ecology	1
emulation	1
enzyme	1
epigenetics	1
fuck	1
geneontology	1
generegulation	1
hgt	1
hla	1
hmm	1
immunohistochemistry	1
inhibitor	1
integration	1
invitro	1
lgt	1
magnetic	1
marker	1
model	1
morphological	1
mrp	1
nanopore	1
nanoscale	1
nature	1
neoselection	1
noise	1
oligonucleotide	1
oral	1
pathobiology	1
pca	1
plant	1
positiveepistasis	1
protection	1
qtl	1
reliability	1
reverse-engineering	1
ribosome	1
sampling	1
sequencing	1
similarity	1
singlecell	1
sites	1
social	1
speciation	1
statistical	1
strain	1
substrate_recognition	1
tag	1
tap	1
terminator	1
text-mining	1
theory	1
threading	1
tissue	1
tlr	1
transmembrane	1
trna	1
vesicle	1
video	1

zwang's binding [30 articles] Export

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