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zwang's dna [21 articles]

Recent papers added to zwang's library classified by the tag dna. You can also see everyone's dna.
  • Insights into Protein–DNA Interactions through Structure Network Analysis
    PLoS Comput Biol, Vol. 4, No. 9. (2008), e1000170.
    by R Sathyapriya, MS Vijayabaskar, Saraswathi Vishveshwara
    posted to structure protein interaction dna by zwang on 2008-09-06 04:04:30 as ** along with 1 person hmk
  • A Feature-Based Approach to Modeling Protein–DNA Interactions
    PLoS Comput Biol, Vol. 4, No. 8. (2008), e1000154.
    by Eilon Sharon, Shai Lubliner, Eran Segal
    posted to dna interaction protein by zwang on 2008-08-30 03:58:06 as ** along with 4 people dakelley Stew emptyhb aalibes
  • Transition state for protein–DNA recognition
    posted to dna protein by zwang on 2008-08-07 13:07:50 as **
  • Footprinting protein-DNA complexes using the hydroxyl radical
    Nat. Protocols, Vol. 3, No. 6. (June 2008), pp. 1092-1100.
    by Swapan S Jain, Thomas D Tullius
    posted to complex dna protein by zwang on 2008-07-04 03:34:52 as **
  • Simulating DNA coding sequence evolution with EvolveAGene 3
    Mol Biol Evol (12 January 2008), msn008.
    by Barry G Hall
    posted to dna evolution sequence simulation by zwang on 2008-04-10 11:24:26 as *** along with 4 people operon aprasad friendpine adacier
  • Single-Molecule DNA Sequencing of a Viral Genome
    Science, Vol. 320, No. 5872. (4 April 2008), pp. 106-109.
    by Timothy D Harris, Phillip R Buzby, Hazen Babcock, Eric Beer, Jayson Bowers, Ido Braslavsky, Marie Causey, Jennifer Colonell, James Dimeo, William J Efcavitch, Eldar Giladi, Jaime Gill, John Healy, Mirna Jarosz, Dan Lapen, Keith Moulton, Stephen R Quake, Kathleen Steinmann, Edward Thayer, Anastasia Tyurina, Rebecca Ward, Howard Weiss, Zheng Xie
    posted to dna genome sequence virus by zwang on 2008-04-07 15:57:43 as ** along with 14 people and 3 groups operon dchughes samjlord neils cabbagezs kinestetika benlin caseybrown kjglennie melting austin ilyaf vmarshal jyuh moernerlab Microbial-Ecology microbiology_nijmegen
  • Genome-wide mapping of allele-specific protein-DNA interactions in human cells
    Nature Methods, Vol. 5, No. 4. (16 March 2008), pp. 307-309.
    by Nathaniel D Maynard, Jing Chen, Rhona K Stuart, Jian-Bing Fan, Bing Ren
    posted to dna genome-wide interaction protein by zwang on 2008-04-02 07:26:10 as ** along with 3 people eskay jyuh inesdesantiago
  • Comparing whole genomes using DNA microarrays
    Nat Rev Genet, Vol. 9, No. 4. (April 2008), pp. 291-302.
    by David Gresham, Maitreya J Dunham, David Botstein
    posted to dna genome microarray by zwang on 2008-03-20 13:03:01 as ** along with 5 people jyuh jo_davies shinetmt giovenko thomaskelder
  • A Novel Bayesian DNA Motif Comparison Method for Clustering and Retrieval
    posted to bayesian clustering dna motif by zwang on 2008-03-03 04:54:02 as ****
  • Molecular dynamics simulations of nucleic acid-protein complexes
    Current Opinion in Structural Biology, Vol. In Press, Corrected Proof
    by Mackerell, Lennart Nilsson
    posted to complex dna dynamics protein rna by zwang on 2008-02-27 02:28:21 as *** along with 3 people and 1 group ruvido sobolevnrm phoenixzxl baker-group
  • Genome-wide profiling of DNA methylation reveals a class of normally methylated CpG island promoters.
    PLoS Genet, Vol. 3, No. 10. (26 October 2007), pp. 2023-2036.
    by L Shen, Y Kondo, Y Guo, J Zhang, L Zhang, S Ahmed, J Shu, X Chen, RA Waterland, JP Issa
    posted to dna genome-wide methylation promoter by zwang on 2007-11-20 08:55:18 as ** along with 1 person sebastien_vigneau
  • A Discrete Class of Intergenic DNA Dictates Meiotic DNA Break Hotspots in Fission Yeast
    PLoS Genetics, Vol. 3, No. 8. (1 August 2007), e141.
    by Gareth A Cromie, Randy W Hyppa, Hugh P Cam, Joseph A Farah, Shiv I Grewal, Gerald R Smith
    posted to dna yeast by zwang on 2007-09-03 15:17:43 as *
  • An Approach to Predict Transcription Factor DNA Binding Site Specificity Based upon Gene and Transcription Factor Functional Categorization
    Bioinformatics (10 July 2007), btm348.
    by Ziliang Qian, Lingyi Lu, Xiaojun Liu, Yu-Dong Cai, Yixue Li
    posted to binding dna gene prediction site transcription by zwang on 2007-08-15 03:43:07 as *** along with 1 person xili03
  • In vitro analysis of DNA-protein interactions by proximity ligation.
    Proc Natl Acad Sci U S A, Vol. 104, No. 9. (27 February 2007), pp. 3067-3072.
    by SM Gustafsdottir, J Schlingemann, A Rada-Iglesias, E Schallmeiner, M Kamali-Moghaddam, C Wadelius, U Landegren
    posted to dna interaction protein by zwang on 2007-04-23 04:06:15 as ** along with 2 people and 1 group jyuh dpollard EisenLab
  • Quantifying DNA-protein binding specificities by using oligonucleotide mass tags and mass spectroscopy
    PNAS, Vol. 104, No. 9. (27 February 2007), pp. 3061-3066.
    by Lingang Zhang, Simon Kasif, And C Cantor
    posted to dna massspectroscopy oligonucleotide protein by zwang on 2007-04-23 04:03:20 as ** along with 2 people and 1 group jyuh cwbrown EisenLab
  • DNA Familial Binding Profiles Made Easy: Comparison of Various Motif Alignment and Clustering Strategies
    PLoS Computational Biology, Vol. 3, No. 3. (1 March 2007), e61.
    by Shaun Mahony, Philip E Auron, Panayiotis V Benos
    posted to clustering dna motif by zwang on 2007-04-19 15:10:17 as * along with 4 people aalibes nklee heliopais pradiptaray
  • Inferring condition-specific transcription factor function from DNA binding and gene expression data
    Mol Syst Biol, Vol. 3 (17 April 2007)
    by Rachel P Mccord, Michael F Berger, Anthony A Philippakis, Martha L Bulyk
    posted to dna geneexpression transcription by zwang on 2007-04-17 17:26:26 as **
  • Precise physical models of protein-DNA interaction from high-throughput data
    PNAS, Vol. 104, No. 2. (9 January 2007), pp. 501-506.
    by Justin B Kinney, Gasper Tkacik, Curtis G Callan
    posted to dna interaction protein by zwang on 2007-04-16 13:55:19 as ** along with 2 people aalibes emptyhb
  • Single-molecule analysis of DNA-protein complexes using nanopores
    Nature Methods, Vol. 4, No. 4. (04 March 2007), pp. 315-317.
    by Breton Hornblower, Amy Coombs, Richard D Whitaker, Anatoly Kolomeisky, Stephen J Picone, Amit Meller, Mark Akeson
    posted to complex dna nanopore protein singlemolecule by zwang on 2007-04-04 15:02:49 as *
  • The sensitive side of protein-DNA interactions
    Nature Methods, Vol. 4, No. 4., pp. 298-299.
    by Allison Doerr
    posted to dna interaction protein by zwang on 2007-04-04 11:11:10 as **
  • Discovering Motifs in Ranked Lists of DNA Sequences
    PLoS Computational Biology, Vol. 3, No. 3. (1 March 2007), e39.
    by Eran Eden, Doron Lipson, Sivan Yogev, Zohar Yakhini
    posted to dna motif by zwang on 2007-03-30 08:47:32 as *** along with 6 people eckart_bindewald GeeSharpMinor ppark idonaldson hpaces isimpson
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