zwang's domain [60 articles] Export

Recent papers added to zwang's library classified by the tag domain. You can also see everyone's domain.

	Clustering of protein domains for functional and evolutionary studies. [My Copy] BMC bioinformatics, Vol. 10, No. 1. (2009), 335. by Pavle Goldstein, Jurica Zucko, Dusica Vujaklija, et al.Anita Krisko, Daslav Hranueli, Paul F. Long, Catherine Etchebest, Bojan Basrak, John Cullum posted to protein evolution domain clustering by zwang on 2009-10-19 09:07:40 as along with 5 people and 2 groups sillitoe kshameer druvus ppgardne phoenixzxl Orengo Group Journal Picks Journal picks
	Structural domain-domain interactions: Assessment and comparison with protein-protein interaction data to improve the interactome. [My Copy] Proteins, Vol. 9999, No. 9999. (5 August 2009), NA. by C. Prieto, J. De Las Rivas posted to structure protein interaction domain by zwang on 2009-09-07 07:16:44 as along with 2 people higueruelo phoenixzxl
	Universal features in the genome-level evolution of protein domains. [My Copy] Genome biology, Vol. 10, No. 1. (30 January 2009), R12. by Marco Cosentino Lagomarsino, Alessandro L. Sellerio, Philip D. Heijning, Bruno Bassetti posted to protein genome evolution domain by zwang on 2009-09-04 08:53:22 as along with 7 people docv phoenixzxl djkt idoerg VGreiff grahamc pawelszczesny
	Comparative analysis and unification of domain-domain interaction networks [My Copy] Bioinformatics, Vol. 25, No. 22. (15 November 2009), pp. 3020-3025. by Patrik Bjorkholm, Erik L. L. Sonnhammer posted to network interaction domain by zwang on 2009-09-01 10:12:53 as along with 3 people and 1 group molnet-mna ilhem phoenixzxl Orengo Group Journal Picks
	Knowledge-guided inference of domain-domain interactions from incomplete protein-protein interaction networks [My Copy] Bioinformatics, Vol. 25, No. 19. (1 October 2009), pp. 2492-2499. by Mei Liu, Xue-wen Chen, Raja Jothi posted to protein network interaction domain by zwang on 2009-08-17 11:45:37 as along with 3 people grahamc robfsouza phoenixzxl
	Nucleoside Monophosphate Complex Structures of the Endonuclease Domain from the Influenza Virus Polymerase PA Subunit Reveal the Substrate Binding Site inside the Catalytic Center [My Copy] J. Virol., Vol. 83, No. 18. (15 September 2009), pp. 9024-9030. by Cong Zhao, Zhiyong Lou, Yu Guo, et al.Ming Ma, Yutao Chen, Shuaiyi Liang, Liang Zhang, Shoudeng Chen, Xuemei Li, Yingfang Liu, Mark Bartlam, Zihe Rao posted to domain influenza polymerase structure by zwang on 2009-07-13 09:15:53 as along with 1 person carlosjavierna
	Conserved and variable domains of RNase MRP RNA. [My Copy] RNA biology, Vol. 6, No. 3. (30 July 2009) by Marcela D. López, Magnus A. Rosenblad, Tore Samuelsson posted to domain rna rnasep by zwang on 2009-04-29 02:30:02 as
	Inferring protein-protein interactions from multiple protein domain combinations. [My Copy] Methods in molecular biology (Clifton, N.J.), Vol. 541 (2009), pp. 43-59. by Simon P. Kanaan, Chengbang Huang, Stefan Wuchty, Danny Z. Chen, Jesús A. Izaguirre posted to domain interaction protein by zwang on 2009-04-23 08:10:46 as along with 1 person kgutwin
	Enhanced Exposure of the CD4-Binding Site to Neutralizing Antibodies by Structural Design of a Membrane-Anchored Human Immunodeficiency Virus Type 1 gp120 Domain [My Copy] J. Virol., Vol. 83, No. 10. (15 May 2009), pp. 5077-5086. by Lan Wu, Tongqing Zhou, Zhi-Yong Yang, et al.Krisha Svehla, Sijy O'Dell, Mark K. Louder, Ling Xu, John R. Mascola, Dennis R. Burton, James A. Hoxie, Robert W. Doms, Peter D. Kwong, Gary J. Nabel posted to binding domain influenza structure by zwang on 2009-04-22 10:23:42 as
	Domain Interaction Footprint: a multi-classification approach to predict domain-peptide interactions [My Copy] Bioinformatics, Vol. 25, No. 13. (1 July 2009), pp. 1632-1639. by Christian Schillinger, Prisca Boisguerin, Gerd Krause posted to domain interaction prediction by zwang on 2009-04-22 02:11:39 as along with 3 people and 1 group ollieredfernwork kshameer phoenixzxl Orengo Group Journal Picks
	A Database of Domain Definitions for Proteins with Complex Interdomain Geometry [My Copy] PLoS ONE, Vol. 4, No. 4. (8 April 2009), e5084. by Indraneel Majumdar, Lisa N. Kinch, Nick V. Grishin posted to domain interaction protein by zwang on 2009-04-10 07:40:38 as
	A Top-Down Approach to Infer and Compare Domain-Domain Interactions across Eight Model Organisms [My Copy] PLoS ONE, Vol. 4, No. 3. (31 March 2009), e5096. by Chittibabu Guda, Brian R. King, Lipika R. Pal, Purnima Guda posted to domain interaction prediction by zwang on 2009-04-02 09:47:10 as along with 1 person phoenixzxl
	Immunological study of HA1 domain of hemagglutinin of influenza H5N1 virus [My Copy] Biochemical and Biophysical Research Communications (24 March 2009) by Fang-Feng Chiu, Nandini Venkatesan, Chia-Rong Wu, et al.Ai-Hsiang Chou, Hsin-Wei Chen, Shu-Pei Lian, Shih-Jen Liu, Chin-Cheng Huang, Wei-Cheng Lian, Pele Chong posted to domain hemagglutinin influenza virus by zwang on 2009-03-31 09:00:31 as
	Close encounters of the third kind: disordered domains and the interactions of proteins [My Copy] BioEssays, Vol. 31, No. 3. (3 March 2009), pp. 328-335. by Peter Tompa, Monika Fuxreiter, Christopher J. Oldfield, Istvan Simon, A. Keith Dunker, Vladimir N. Uversky posted to domain interaction protein by zwang on 2009-03-06 06:53:10 as along with 3 people kiekyon niallhaslam higueruelo
	Are Protein Domains Modules of Lateral Genetic Transfer? [My Copy] PLoS ONE, Vol. 4, No. 2. (20 February 2009), e4524. by Cheong X. Chan, Aaron E. Darling, Robert G. Beiko, Mark A. Ragan posted to domain evolution protein by zwang on 2009-02-26 13:52:10 as along with 3 people chancx druvus AaronDarling
	FIEFDom: a transparent domain boundary recognition system using a fuzzy mean operator [My Copy] Nucl. Acids Res., Vol. 37, No. 2. (1 February 2009), pp. 452-462. by Rajkumar Bondugula, Michael S. Lee, Anders Wallqvist posted to domain by zwang on 2009-02-24 07:46:09 as
	The evolutionary mechanics of domain organization in proteomes and the rise of modularity in the protein world. [My Copy] Structure (London, England : 1993), Vol. 17, No. 1. (14 January 2009), pp. 66-78. by M. Wang, G. Caetano-Anollés posted to domain evolution protein by zwang on 2009-02-23 02:48:38 as along with 1 person phoenixzxl
	Structure of NS1A effector domain from the influenza A/Udorn/72 virus [My Copy] Acta Crystallographica Section D: Biological Crystallography, Vol. 65, No. 1. (January 2009), pp. 11-17. by S. Xia, A. F. Monzingo, J. D. Robertus posted to domain influenza structure virus by zwang on 2009-02-06 08:10:59 as
	Structural Basis of the Influenza A Virus RNA Polymerase PB2 RNA-binding Domain Containing the Pathogenicity-determinant Lysine 627 Residue [My Copy] Journal of Biological Chemistry, Vol. 284, No. 11. (13 March 2009), pp. 6855-6860. by Takashi Kuzuhara, Daisuke Kise, Hiroko Yoshida, et al.Takahiro Horita, Yoshimi Murazaki, Akie Nishimura, Noriko Echigo, Hiroko Utsunomiya, Hideaki Tsuge posted to binding domain influenza polymerase rna virus by zwang on 2009-02-05 01:43:08 as along with 1 person dfdong
	Structure and Functional Role of Dynein's Microtubule-Binding Domain [My Copy] Science, Vol. 322, No. 5908. (12 December 2008), pp. 1691-1695. by Andrew P. Carter, Joan E. Garbarino, Elizabeth M. Wilson-Kubalek, et al.Wesley E. Shipley, Carol Cho, Ronald A. Milligan, Ronald D. Vale, I. R. Gibbons posted to binding domain structure by zwang on 2009-01-09 08:57:15 as along with 4 people ClaireFBBurns cactus hsekiguc kshundyak
	Characterization of domain-peptide interaction interface: a generic structure-based model to decipher the binding specificity of SH3 domains [My Copy] Mol Cell Proteomics (20 November 2008), M800450-MCP200. by Tingjun Hou, Zheng Xu, Wei Zhang, et al.William A. Mclaughlin, David A. Case, Yang Xu, Wei Wang posted to binding domain interaction structure by zwang on 2008-11-24 09:01:38 as along with 2 people kgutwin phoenixzxl
	Genome-wide survey of prokaryotic serine proteases: Analysis of distribution and domain architectures of five serine protease families in prokaryotes [My Copy] BMC Genomics, Vol. 9, No. 1. (2008) by Lokesh Tripathi, Ramanathan Sowdhamini posted to domain genome-wide prokaryote by zwang on 2008-11-24 09:00:54 as along with 2 people kshameer neils
	Structure Prediction of Domain Insertion Proteins from Structures of Individual Domains [My Copy] Structure, Vol. 16, No. 4. (8 April 2008), pp. 513-527. by Monica Berrondo, Marc Ostermeier, Jeffrey J. Gray posted to domain peptide prediction structure by zwang on 2008-11-12 01:40:59 as along with 2 people raik choonpeng
	Integrating Expression Data with Domain Interaction Networks [My Copy] Bioinformatics (19 August 2008), btn437. by Dorothea Emig, Melissa S. Cline, Thomas Lengauer, Mario Albrecht posted to domain interaction network by zwang on 2008-10-28 13:43:17 as along with 7 people chad_davis jfr guhjy barriot druvus zimbo1 grahamc
	A Specificity Map for the PDZ Domain Family [My Copy] PLoS Biology, Vol. 6, No. 9. (1 September 2008), e239. by Raffi Tonikian, Yingnan Zhang, Stephen L. Sazinsky, et al.Bridget Currell, Jung-Hua Yeh, Boris Reva, Heike A. Held, Brent A. Appleton, Marie Evangelista, Yan Wu, Xiaofeng Xin, Andrew C. Chan, Somasekar Seshagiri, Laurence A. Lasky, Chris Sander, Charles Boone, Gary D. Bader, Sachdev S. Sidhu posted to domain interaction protein by zwang on 2008-10-20 05:11:28 as along with 6 people and 3 groups kgutwin balicea grahamc markchen cabbagesofdoom barry structural_bioinformatics McCammon Bioinformatics
	Identification of Protein Domains by Shotgun Proteolysis [My Copy] Journal of Molecular Biology, Vol. In Press, Corrected Proof by Daniel Christ, Greg Winter posted to domain protein structure by zwang on 2008-09-16 14:28:20 as along with 1 person tny
	Built-in loops allow versatility in domain–domain interactions: Lessons from self-interacting domains [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 36. (2008), pp. 13292-13297. by Eyal Akiva, Zohar Itzhaki, Hanah Margalit posted to domain interaction by zwang on 2008-09-11 02:51:51 as along with 5 people pablocarb cactus winterschlaefer icq242500260 marck
	Predicting PDZ domain–peptide interactions from primary sequences [My Copy] Nature Biotechnology, Vol. 26, No. 9. (17 August 2008), pp. 1041-1045. by Jiunn R. Chen, Bryan H. Chang, John E. Allen, Michael A. Stiffler, Gavin Macbeath posted to domain interaction prediction protein by zwang on 2008-09-10 07:31:56 as along with 5 people Evangelia yzlab phoenixzxl guhjy cabbagesofdoom
	Message-passing algorithms for the prediction of protein domain interactions from protein-protein interaction data [My Copy] Bioinformatics, Vol. 24, No. 18. (15 September 2008), pp. 2064-2070. by Mudassar Iqbal, Alex A. Freitas, Colin G. Johnson, Massimo Vergassola posted to algorithm domain interaction protein by zwang on 2008-09-06 02:54:38 as along with 6 people carlk grahamc afon reyez iris_2001 phoenixzxl
	Impacts of protein-protein interaction domains on organism and network complexity [My Copy] Genome Research, Vol. 18, No. 9. posted to domain interaction protein by zwang on 2008-09-03 02:11:04 as
	A Protein Domain-Based Interactome Network for C. elegans Early Embryogenesis [My Copy] Cell, Vol. 134, No. 3. (8 August 2008), pp. 534-545. by Mike Boxem, Zoltan Maliga, Niels Klitgord, et al.Na Li, Irma Lemmens, Miyeko Mana, Lorenzo de Lichtervelde, Joram D. Mul, Diederik van de Peut, Maxime Devos, Nicolas Simonis, Muhammed A. Yildirim, Murat Cokol, Huey-Ling Kao, Anne-Sophie de Smet, Haidong Wang, Anne-Lore Schlaitz, Tong Hao, Stuart Milstein, Changyu Fan, Mike Tipsword, Kevin Drew, Matilde Galli, Kahn Rhrissorrakrai, David Drechsel, Daphne Koller, Frederick P. Roth, Lilia M. Iakoucheva, Keith A. Dunker, Richard Bonneau, Kristin C. Gunsalus, David E. Hill, Fabio Piano, Jan Tavernier, Sander van den Heuvel, Anthony A. Hyman, Marc Vidal posted to domain interaction network protein y2h yeast by zwang on 2008-08-13 02:17:01 as along with 3 people cerca grahamc phoenixzxl
	Impacts of protein-protein interaction domains on organism and network complexityPPI domains and organism/network complexity [My Copy] posted to domain interaction network protein by zwang on 2008-08-11 04:15:42 as
	An integrative approach for predicting interactions of protein regions [My Copy] Bioinformatics, Vol. 24, No. 16. (15 August 2008), pp. i35-41. by Sven-Eric Schelhorn, Thomas Lengauer, Mario Albrecht posted to domain interaction prediction protein by zwang on 2008-08-11 04:13:26 as along with 4 people phoenixzxl Jporci neils kluck
	Functional coherence in domain interaction networks [My Copy] Bioinformatics, Vol. 24, No. 16. (15 August 2008), pp. i28-34. by Jayesh Pandey, Mehmet Koyuturk, Shankar Subramaniam, Ananth Grama posted to domain interaction network by zwang on 2008-08-11 03:58:01 as along with 3 people mgomes davidecellai phoenixzxl
	Predicting protein function from domain content [My Copy] Bioinformatics (30 June 2008), btn312. by Kristoffer Forslund, Erik L. Sonnhammer posted to domain prediction protein by zwang on 2008-07-01 02:44:42 as along with 5 people phoenixzxl laurenbragg saket druvus reyez
	Sequence Similarity Network Reveals Common Ancestry of Multidomain Proteins [My Copy] PLoS Comput Biol, Vol. 4, No. 5. (16 May 2008), e1000063. by Nan Song, Jacob M. Joseph, George B. Davis, Dannie Durand posted to domain protein by zwang on 2008-06-27 04:08:47 as along with 2 people tmmurali Ema
	The Leucine-Rich Repeat Domain of Internalin B Folds along a Polarized N-Terminal Pathway [My Copy] Structure, Vol. 16, No. 5. (7 May 2008), pp. 705-714. by Naomi Courtemanche, Doug Barrick posted to domain protein by zwang on 2008-06-26 04:08:33 as
	Design of protein function leaps by directed domain interface evolution [My Copy] Proceedings of the National Academy of Sciences (29 April 2008), 0801097105. by Jin Huang, Akiko Koide, Koki Makabe, Shohei Koide posted to domain evolution interface protein by zwang on 2008-05-09 02:40:12 as along with 5 people GeeSharpMinor cmzmasek choonpeng marck phoenixzxl
	Evolution of protein domain promiscuity in eukaryotes [My Copy] Genome Res. (29 January 2008), gr.6943508. by Malay K. Basu, Liran Carmel, Igor B. Rogozin, Eugene V. Koonin posted to domain eukaryota evolution protein by zwang on 2008-03-03 04:15:14 as along with 10 people swp09 druvus kshameer saket cmzmasek michC neils grahamc carlk dchughes
	An intramolecular FRET system monitors fingers subdomain opening in Klentaq1 [My Copy] Protein Sci, Vol. 17, No. 3. (1 March 2008), pp. 401-408. by William J. Allen, Paul J. Rothwell, Gabriel Waksman posted to domain fret invivo subunit by zwang on 2008-02-22 12:42:25 as along with 1 person joseolucha
	Detecting coevolution in and among protein domains. [My Copy] PLoS computational biology, Vol. 3, No. 11. (1 November 2007), e211. by Chen-Hsiang H. Yeang, David Haussler posted to co-evolution domain prediction protein by zwang on 2007-12-10 04:24:46 as along with 13 people and 1 group dfdong martainn balicea skhadar sobolevnrm niallhaslam hpaces mingzhi Ema phoenixzxl penpen926 friendpine pradiptaray baker-group
	The Modular Organization of Domain Structures: Insights into Protein–Protein Binding [My Copy] PLoS Computational Biology, Vol. 3, No. 12. (1 December 2007), e239. by Del, Pablo Carbonell posted to binding domain protein structure by zwang on 2007-12-08 08:54:46 as along with 9 people bicko chad_davis choonpeng grahamc cjeans niallhaslam biehl marti carlk
	Evolutionary Genomics: Transdomain Gene Transfers [My Copy] Current Biology, Vol. 17, No. 21. (6 November 2007), pp. R935-R936. by Seth R. Bordenstein posted to domain evolution genome by zwang on 2007-11-16 06:44:29 as along with 4 people and 1 group operon skhadar mblwhoi hpaces LabDros
	Detecting Coevolution in and among Protein Domains [My Copy] PLoS Computational Biology, Vol. 3, No. 11. (1 November 2007), e211. by Chen-Hsiang Yeang, David Haussler posted to co-evolution domain prediction protein by zwang on 2007-11-03 03:07:56 as along with 1 person cjeans
	Interaction of signal-recognition particle 54 GTPase domain and signal-recognition particle RNA in the free signal-recognition particle [My Copy] Proceedings of the National Academy of Sciences, Vol. 104, No. 38. (18 September 2007), pp. 14911-14916. by Tobias Hainzl, Shenghua Huang, Elisabeth A. Sauer-Eriksson posted to domain interaction rna by zwang on 2007-11-01 02:11:19 as
	Structural insights into the interaction of the evolutionarily conserved ZPR1 domain tandem with eukaryotic EF1A, receptors, and SMN complexes [My Copy] Proceedings of the National Academy of Sciences, Vol. 104, No. 35. (28 August 2007), pp. 13930-13935. by Ashwini K. Mishra, Laxman Gangwani, Roger J. Davis, David G. Lambright posted to complex domain eukaryota evolution interaction structure by zwang on 2007-11-01 02:01:47 as
	Analysis on multi-domain cooperation for predicting protein-protein interactions [My Copy] BMC Bioinformatics, Vol. 8, No. 1. (2007) by Rui S. Wang, Yong Wang, Ling Y. Wu, Xiang S. Zhang, Luonan Chen posted to co-evolution domain interaction prediction protein by zwang on 2007-10-22 01:55:10 as along with 2 people guhjy phoenixzxl
	Detecting the Coevolution in and among Protein Domains [My Copy] PLoS Computational Biology, Vol. preprint, No. 2007. (1 September 2007), e211.eor. by Chen-Hsiang Yeang, David Haussler posted to co-evolution domain protein by zwang on 2007-09-22 08:05:24 as
	Specific binding of a Pop6/Pop7 heterodimer to the P3 stem of the yeast RNase MRP and RNase P RNAs [My Copy] RNA (23 August 2007), rna.654407. by Anna Perederina, Olga Esakova, Hasan Koc, Mark E. Schmitt, Andrey S. Krasilnikov posted to binding domain rna rnasep site yeast by zwang on 2007-09-02 07:31:22 as
	Evolution of Function in the "Two Dinucleotide Binding Domains" Flavoproteins [My Copy] PLoS Comput Biol, Vol. 3, No. 7. (20 July 2007), e121. by Sunil Ojha, Elaine C. Meng, Patricia C. Babbitt posted to binding domain evolution interaction protein site by zwang on 2007-08-29 02:31:54 as along with 5 people and 2 groups anuragsethi pradiptaray barry Einat mdimon structural_bioinformatics Bioinformatics

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protein	358
influenza	248
structure	197
evolution	189
interaction	182
virus	155
network	132
prediction	109
rna	89
genome	77
domain	60
yeast	60
sequence	59
gene	54
complex	47
phylogeny	43
transcription	34
rnasep	33
co-evolution	32
avian	30
binding	30
dynamics	29
polymerase	29
mutation	28
folding	27
genome-wide	27
bacterial	26
dna	26
expression	23
motif	23
hemagglutinin	21
alignment	20
clustering	19
modeling	19
regulatory	19
site	19
human	18
antibody	17
eukaryota	17
regulation	16
function	15
genetic	15
design	14
fluorescent	14
drug	13
residue	13
synthetic	13
bayesian	12
metabolism	12
epitope	11
immunity	11
interface	10
microarray	10
pathway	10
promoter	10
algorithm	9
massspectrometry	9
diversity	8
ecoli	8
hiv	8
peptide	8
phenotype	8
bioinformatics	7
computational	7
invivo	7
replication	7
review	7
vaccine	7
y2h	7
chromatin	6
hostspecialization	6
specy	6
system	6
systematic	6
annotation	5
disease	5
fret	5
geneexpression	5
homology	5
insilico	5
mammal	5
nmr	5
phosphorylation	5
prokaryote	5
selection	5
substitution	5
subunit	5
swine	5
visualization	5
antigen	4
architecture	4
assembly	4
divergence	4
em	4
experiment	4
genetics	4
hierarchical	4
histone	4
localization	4
membrane	4
microrna	4
module	4
ncrna	4
nuclear	4
ortholog	4
proteomics	4
purification	4
rule	4
surface	4
svm	4
archaea	3
biofuel	3
cancer	3
cellcycle	3
coil	3
contact	3
deletion	3
element	3
genefamily	3
immune	3
m2	3
methylation	3
np	3
profile	3
protocol	3
reassortment	3
research	3
science	3
secondary	3
simulation	3
translation	3
ysd	3
accuracy	2
bifc	2
bootstrap	2
bret	2
chaperone	2
chromosome	2
cloning	2
comparativegenomics	2
cooccurrence	2
database	2
docking	2
endogenous	2
epistasis	2
fitness	2
homologymodeling	2
hub	2
information-theory	2
inhibition	2
likelihood	2
linker	2
mathematic	2
mhc	2
mi	2
molecularrecognition	2
mp	2
neural	2
ns	2
phylogeography	2
positiveselection	2
presentation	2
primer	2
ribozyme	2
singlemolecule	2
stability	2
target	2
technique	2
viability	2
web	2
bsi	1
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coevolution	1
co-extinction	1
collaboration	1
compensatory	1
confidence	1
counter	1
cpg-island	1
culture	1
degradation	1
detection	1
differentiation	1
duplication	1
ecology	1
emulation	1
enzyme	1
epigenetics	1
fuck	1
geneontology	1
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nature	1
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noise	1
oligonucleotide	1
oral	1
pathobiology	1
pca	1
plant	1
positiveepistasis	1
protection	1
qtl	1
reliability	1
reverse-engineering	1
ribosome	1
sampling	1
sequencing	1
similarity	1
singlecell	1
sites	1
social	1
speciation	1
statistical	1
strain	1
substrate_recognition	1
tag	1
tap	1
terminator	1
text-mining	1
theory	1
threading	1
tissue	1
tlr	1
transmembrane	1
trna	1
vesicle	1
video	1

zwang's domain [60 articles] Export

zwang's tags