zwang's interaction [182 articles] Export

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	Molecular Basis of the Interaction for an Essential Subunit PA-PB1 in Influenza Virus RNA Polymerase: Insights from Molecular Dynamics Simulation and Free Energy Calculation. [My Copy] Molecular pharmaceutics (2 November 2009) by Huanxiang Liu, Xiaojun Yao posted to protein polymerase interaction influenza by zwang on 2009-11-10 08:04:19 as
	Structure of Protein Interaction Networks and Their Implications on Drug Design [My Copy] PLoS Comput Biol, Vol. 5, No. 10. (30 October 2009), e1000550. by Takeshi Hase, Hiroshi Tanaka, Yasuhiro Suzuki, So Nakagawa, Hiroaki Kitano posted to protein network interaction drug by zwang on 2009-11-03 08:24:49 as along with 9 people and 1 group kiekyon nickolay kshameer phoenixzxl venancio CorinYeats ess30 poirel jbesnard Orengo Group Journal Picks
	Phylogenetic analysis of modularity in protein interaction networks. [My Copy] BMC bioinformatics, Vol. 10, No. 1. (14 October 2009), 333. by Sinan Erten, Xin Li, Gurkan Bebek, Jing Li, Mehmet Koyutürk posted to protein phylogeny network interaction by zwang on 2009-10-16 03:25:50 as along with 7 people and 2 groups sillitoe biomcgary ppgardne grahamc druvus barriot phoenixzxl Orengo Group Journal Picks Journal picks
	Comprehensive Mapping of Long-Range Interactions Reveals Folding Principles of the Human Genome [My Copy] Science, Vol. 326, No. 5950. (9 October 2009), pp. 289-293. by Erez Lieberman-Aiden, Nynke L. van Berkum, Louise Williams, et al.Maxim Imakaev, Tobias Ragoczy, Agnes Telling, Ido Amit, Bryan R. Lajoie, Peter J. Sabo, Michael O. Dorschner, Richard Sandstrom, Bradley Bernstein, M. A. Bender, Mark Groudine, Andreas Gnirke, John Stamatoyannopoulos, Leonid A. Mirny, Eric S. Lander, Job Dekker posted to interaction genome folding by zwang on 2009-10-14 09:35:49 as along with 31 people and 3 groups pmcarlton alhufton psique qayub chvlyl TorstenWaldminghaus kintoki Garamonfok inesdesantiago NickFurnham DrRichardBadge roys rdiaz daveGerrard colinveal frohike nrk891 timflutre afenley kshameer polivares mgatmedsci diamantis flbarroso jdoconnell fenghezi daforerog bpcusack gjuggler gdb gbloeb JLab BergmanLab Journal picks
	Context-Specific Target Definition in Influenza A Virus Hemagglutinin-Glycan Receptor Interactions [My Copy] posted to interaction influenza by zwang on 2009-09-11 02:36:04 as
	Structural domain-domain interactions: Assessment and comparison with protein-protein interaction data to improve the interactome. [My Copy] Proteins, Vol. 9999, No. 9999. (5 August 2009), NA. by C. Prieto, J. De Las Rivas posted to structure protein interaction domain by zwang on 2009-09-07 07:16:44 as along with 2 people higueruelo phoenixzxl
	Comparative analysis and unification of domain-domain interaction networks [My Copy] Bioinformatics, Vol. 25, No. 22. (15 November 2009), pp. 3020-3025. by Patrik Bjorkholm, Erik L. L. Sonnhammer posted to network interaction domain by zwang on 2009-09-01 10:12:53 as along with 3 people and 1 group molnet-mna ilhem phoenixzxl Orengo Group Journal Picks
	Four Distances between Pairs of Amino Acids Provide a Precise Description of their Interaction [My Copy] PLoS Comput Biol, Vol. 5, No. 8. (14 August 2009), e1000470. by Mati Cohen, Vladimir Potapov, Gideon Schreiber posted to protein interaction by zwang on 2009-08-31 15:02:26 as along with 6 people nickolay klexa Diego_Prada reyez TRHvidsten ericrpaquet
	Multi-level learning: improving the prediction of protein, domain and residue interactions by allowing information flow between levels [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 241. by Kevin Yip, Philip Kim, Drew McDermott, Mark Gerstein posted to prediction interaction by zwang on 2009-08-27 06:59:48 as along with 8 people and 1 group flbarroso jago gwallau installe barriot kshameer peteruetz phoenixzxl Simulation of operations and interactions
	Knowledge-guided inference of domain-domain interactions from incomplete protein-protein interaction networks [My Copy] Bioinformatics, Vol. 25, No. 19. (1 October 2009), pp. 2492-2499. by Mei Liu, Xue-wen Chen, Raja Jothi posted to protein network interaction domain by zwang on 2009-08-17 11:45:37 as along with 3 people grahamc robfsouza phoenixzxl
	Geometric De-noising of Protein-Protein Interaction Networks [My Copy] PLoS Comput Biol, Vol. 5, No. 8. (7 August 2009), e1000454. by Oleksii Kuchaiev, Marija Rašajski, Desmond J. Higham, Nataša Pržulj posted to protein network interaction by zwang on 2009-08-13 04:20:34 as along with 8 people and 1 group CorinYeats klexa tmmurali roys grahamc robfsouza phoenixzxl kiekyon Orengo Group Journal Picks
	Protein-Peptide Interactions Adopt the Same Structural Motifs as Monomeric Protein Folds [My Copy] cell posted to structure protein motif interaction by zwang on 2009-08-12 13:30:49 as
	Supervised prediction of drug-target interactions using bipartite local models [My Copy] Bioinformatics, Vol. 25, No. 18. (15 September 2009), pp. 2397-2403. by Kevin Bleakley, Yoshihiro Yamanishi posted to interaction prediction by zwang on 2009-07-22 10:26:08 as along with 4 people mingzhi ptrobajo apocapoc phoenixzxl
	Prediction of protein-protein interactions: a study of the co-evolution model. [My Copy] Methods in molecular biology (Clifton, N.J.), Vol. 541 (2009), pp. 61-88. by Itai Sharon, Jason V. Davis, Golan Yona posted to co-evolution interaction prediction protein by zwang on 2009-06-30 09:20:42 as along with 3 people chica kgutwin phoenixzxl
	Protein interaction platforms: visualization of interacting proteins in yeast [My Copy] Nat Meth, Vol. 6, No. 7. (31 July 2009), pp. 500-502. by Alexa M. Schmitz, Monica F. Morrison, Akochi O. Agunwamba, Max L. Nibert, Cammie F. Lesser posted to interaction protein visualization yeast by zwang on 2009-06-30 09:12:19 as along with 4 people module Yanno guhjy flbarroso
	Influence of protein abundance on high-throughput protein-protein interaction detection. [My Copy] PloS one, Vol. 4, No. 6. (5 June 2009), e5815. by J. Ivanic, X. Yu, A. Wallqvist, J. Reifman posted to interaction protein by zwang on 2009-06-11 03:47:26 as along with 3 people nzm guhjy sjcockell
	Nuclear Factor 90 Negatively Regulates Influenza Virus Replication by Interacting with Viral Nucleoprotein [My Copy] J. Virol., Vol. 83, No. 16. (15 August 2009), pp. 7850-7861. by Pui Wang, Wenjun Song, Bobo W. Mok, et al.Pengxi Zhao, Kun Qin, Alexander Lai, Gavin J. D. Smith, Jinxia Zhang, Tianwei Lin, Yi Guan, Honglin Chen posted to influenza interaction np replication by zwang on 2009-06-08 04:24:35 as along with 1 person friendpine
	Protein interaction platforms: visualization of interacting proteins in yeast : Article : Nature Methods [My Copy] posted to interaction protein yeast by zwang on 2009-06-03 05:05:02 as
	Structural insight into the essential PB1-PB2 subunit contact of the influenza virus RNA polymerase : Article : The EMBO Journal [My Copy] posted to influenza interaction polymerase by zwang on 2009-05-24 13:59:55 as
	Prediction of HIV-1 virus-host protein interactions using virus and host sequence motifs. [My Copy] BMC medical genomics, Vol. 2, No. 1. (18 May 2009) by Perry Evans, William Dampier, Lyle Ungar, Aydin Tozeren posted to hiv interaction protein by zwang on 2009-05-21 07:19:41 as along with 3 people tmmurali niallhaslam friendpine
	Thermodynamic and structural investigation of bi-specificity in protein-protein interactions [My Copy] Journal of Molecular Biology (08 April 2009) by Huaying Zhao, Saranga Naganathan, Dorothy Beckett posted to interaction protein structure by zwang on 2009-05-18 05:37:07 as along with 2 people higueruelo paulschlesinger
	Protein function annotation from sequence: prediction of residues interacting with RNA [My Copy] Bioinformatics (23 April 2009), btp257. by R. V. Spriggs, Y. Murakami, H. Nakamura, S. Jones posted to function interaction prediction rna sequence by zwang on 2009-04-25 07:40:25 as along with 2 people operon phoenixzxl
	Inferring protein-protein interactions from multiple protein domain combinations. [My Copy] Methods in molecular biology (Clifton, N.J.), Vol. 541 (2009), pp. 43-59. by Simon P. Kanaan, Chengbang Huang, Stefan Wuchty, Danny Z. Chen, Jesús A. Izaguirre posted to domain interaction protein by zwang on 2009-04-23 08:10:46 as along with 1 person kgutwin
	Domain Interaction Footprint: a multi-classification approach to predict domain-peptide interactions [My Copy] Bioinformatics, Vol. 25, No. 13. (1 July 2009), pp. 1632-1639. by Christian Schillinger, Prisca Boisguerin, Gerd Krause posted to domain interaction prediction by zwang on 2009-04-22 02:11:39 as along with 3 people and 1 group ollieredfernwork kshameer phoenixzxl Orengo Group Journal Picks
	Information flow analysis of interactome networks. [My Copy] PLoS computational biology, Vol. 5, No. 4. (10 April 2009), e1000350. by Patrycja Vasilyev V. Missiuro, Kesheng Liu, Lihua Zou, et al.Brian C. Ross, Guoyan Zhao, Jun S. Liu, Hui Ge posted to interaction network by zwang on 2009-04-10 07:41:55 as along with 18 people and 1 group jfr freesci flbarroso peteruetz phoenixzxl robfsouza reyez VGreiff colmryan sobolevnrm hryk shikin dswan fgibson coela ddahlem mstumpf friendpine baker-group
	A Database of Domain Definitions for Proteins with Complex Interdomain Geometry [My Copy] PLoS ONE, Vol. 4, No. 4. (8 April 2009), e5084. by Indraneel Majumdar, Lisa N. Kinch, Nick V. Grishin posted to domain interaction protein by zwang on 2009-04-10 07:40:38 as
	A Top-Down Approach to Infer and Compare Domain-Domain Interactions across Eight Model Organisms [My Copy] PLoS ONE, Vol. 4, No. 3. (31 March 2009), e5096. by Chittibabu Guda, Brian R. King, Lipika R. Pal, Purnima Guda posted to domain interaction prediction by zwang on 2009-04-02 09:47:10 as along with 1 person phoenixzxl
	Nanoparticle-Target Interactions Parallel Antibody-Protein Interactions. [My Copy] Analytical chemistry (26 March 2009) by Isaac Koh, Rui Hong, Ralph Weissleder, Lee Josephson posted to interaction protein by zwang on 2009-03-31 09:28:55 as
	Convergence and combination of methods in protein–protein docking [My Copy] Current Opinion in Structural Biology, Vol. 19, No. 2. (25 April 2009), pp. 164-170. by Sandor Vajda, Dima Kozakov posted to docking interaction protein by zwang on 2009-03-31 09:02:15 as along with 4 people bmduggan reyez barry paulschlesinger
	Intrinsic Disorder in Protein Interactions: Insights From a Comprehensive Structural Analysis [My Copy] PLoS Comput Biol, Vol. 5, No. 3. (13 March 2009), e1000316. by Jessica H. Fong, Benjamin A. Shoemaker, Sergiy O. Garbuzynskiy, Michail Y. Lobanov, Oxana V. Galzitskaya, Anna R. Panchenko posted to interaction protein structure by zwang on 2009-03-31 08:56:19 as along with 7 people kiekyon agustinarce pablocarb chica phoenixzxl bobychan bpcusack
	A feature-based approach to modeling protein-protein interaction hot spots [My Copy] Nucl. Acids Res., Vol. 37, No. 8. (1 May 2009), pp. 2672-2687. by Kyu-Il Cho, Dongsup Kim, Doheon Lee posted to interaction protein by zwang on 2009-03-11 07:05:41 as along with 5 people pablocarb higueruelo flbarroso phoenixzxl neils
	Close encounters of the third kind: disordered domains and the interactions of proteins [My Copy] BioEssays, Vol. 31, No. 3. (3 March 2009), pp. 328-335. by Peter Tompa, Monika Fuxreiter, Christopher J. Oldfield, Istvan Simon, A. Keith Dunker, Vladimir N. Uversky posted to domain interaction protein by zwang on 2009-03-06 06:53:10 as along with 3 people kiekyon niallhaslam higueruelo
	Predicting helix-helix interactions from residue contacts in membrane proteins [My Copy] Bioinformatics, Vol. 25, No. 8. (15 April 2009), pp. 996-1003. by Allan Lo, Yi-Yuan Chiu, Einar A. Rodland, Ping-Chiang Lyu, Ting-Yi Sung, Wen-Lian Hsu posted to interaction prediction protein residue by zwang on 2009-03-05 02:07:37 as along with 6 people xdeupi ChanghuiYan george_g friendpine neils phoenixzxl
	PPI Finder: A Mining Tool for Human Protein-Protein Interactions [My Copy] PLoS ONE, Vol. 4, No. 2. (23 February 2009), e4554. by Min He, Yi Wang, Wei Li posted to interaction protein by zwang on 2009-02-26 13:51:38 as along with 5 people daforerog liblab fgibson guhjy sjcockell
	Uncovering the rules for proteinâprotein interactions from yeast genomic data [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 10. (10 March 2009), pp. 3752-3757. by Jin Wang, Chunhe Li, Erkang Wang, Xidi Wang posted to interaction protein yeast by zwang on 2009-02-24 07:43:15 as along with 8 people and 1 group carlk guhjy AbnerCYH sobolevnrm mariap3636 mstumpf grahamc phoenixzxl baker-group
	Local descriptors of protein structure: A systematic analysis of the sequence-structure relationship in proteins using short- and long-range interactions [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 75, No. 4. (2009), pp. 870-884. by Torgeir R. Hvidsten, Andriy Kryshtafovych, Krzysztof Fidelis posted to interaction protein sequence structure by zwang on 2009-02-05 02:43:28 as along with 2 people TRHvidsten reyez
	Joint Evolutionary Trees: A Large-Scale Method To Predict Protein Interfaces Based on Sequence Sampling [My Copy] PLoS Comput Biol, Vol. 5, No. 1. (23 January 2009), e1000267. by Stefan Engelen, Ladislas A. Trojan, Sophie Sacquin-Mora, Richard Lavery, Alessandra Carbone posted to interaction interface phylogeny prediction by zwang on 2009-02-05 01:57:13 as along with 3 people phoenixzxl kshameer druvus
	Identification of direct residue contacts in protein–protein interaction by message passing [My Copy] posted to interaction protein residue by zwang on 2009-01-07 04:28:46 as
	The host-dependent interaction of alpha-importins with influenza PB2 polymerase subunit is required for virus RNA replication. [My Copy] PLoS ONE, Vol. 3, No. 12. (2008) by P. Resa-Infante, N. Jorba, N. Zamarreño, Y. Fernández, S. Juárez, J. Ortín posted to hostspecialization influenza interaction polymerase rna by zwang on 2009-01-06 05:13:07 as
	Structure - Prediction of Protein-Protein Interface Sequence Diversity Using Flexible Backbone Computational Protein Design [My Copy] posted to interaction prediction protein structure by zwang on 2009-01-06 03:07:11 as
	Literature-curated protein interaction datasets [My Copy] Nature Methods, Vol. 6, No. 1. (30 December 2008), pp. 39-46. by Michael E. Cusick, Haiyuan Yu, Alex Smolyar, et al.Kavitha Venkatesan, Anne-Ruxandra Carvunis, Nicolas Simonis, Jean-François Rual, Heather Borick, Pascal Braun, Matija Dreze, Jean Vandenhaute, Mary Galli, Junshi Yazaki, David E. Hill, Joseph R. Ecker, Frederick P. Roth, Marc Vidal posted to interaction protein by zwang on 2009-01-05 09:42:50 as along with 15 people fgibson allysonlister carlk aramesh2 ocs reyez kshameer neils daforerog lesikv sjcockell dullhunk icq242500260 guhjy hmk
	An in vitro microfluidic approach to generating protein-interaction networks [My Copy] Nature Methods, Vol. 6, No. 1. (21 December 2008), pp. 71-74. by Doron Gerber, Sebastian J. Maerkl, Stephen R. Quake posted to interaction network protein by zwang on 2009-01-05 08:52:21 as along with 4 people and 1 group abhishek_tiwari windman83 jbhiatt skoch3 Koch_Lab
	An experimentally derived confidence score for binary protein-protein interactions [My Copy] Nat Meth, Vol. 6, No. 1. (07 December 2008), pp. 91-97. by Pascal Braun, Murat Tasan, Matija Dreze, et al.Miriam Barrios-Rodiles, Irma Lemmens, Haiyuan Yu, Julie M. Sahalie, Ryan R. Murray, Luba Roncari, Anne-Sophie de Smet, Kavitha Venkatesan, Jean-Francois Rual, Jean Vandenhaute, Michael E. Cusick, Tony Pawson, David E. Hill, Jan Tavernier, Jeffrey L. Wrana, Frederick P. Roth, Marc Vidal posted to interaction protein y2h by zwang on 2009-01-05 08:49:00 as along with 7 people aceol lawraga anf carlk ocs guhjy sjcockell
	Integrated network analysis platform for protein-protein interactions. [My Copy] Nature methods (14 December 2008) by Jianmin Wu, Tea Vallenius, Kristian Ovaska, Jukka Westermarck, Tomi P P. Mäkelä, Sampsa Hautaniemi posted to interaction network protein by zwang on 2009-01-05 08:48:16 as along with 5 people Garamonfok renatomilani shikin guhjy Terkko
	Empirically controlled mapping of the Caenorhabditis elegans protein-protein interactome network [My Copy] Nat Meth, Vol. 6, No. 1. (14 December 2008), pp. 47-54. by Nicolas Simonis, Jean-Francois Rual, Anne-Ruxandra Carvunis, et al.Murat Tasan, Irma Lemmens, Tomoko Hirozane-Kishikawa, Tong Hao, Julie M. Sahalie, Kavitha Venkatesan, Fana Gebreab, Sebiha Cevik, Niels Klitgord, Changyu Fan, Pascal Braun, Ning Li, Nono Ayivi-Guedehoussou, Elizabeth Dann, Nicolas Bertin, David Szeto, Amelie Dricot, Muhammed A. Yildirim, Chenwei Lin, Anne-Sophie de Smet, Huey-Ling Kao, Christophe Simon, Alex Smolyar, Jin S. Ahn, Muneesh Tewari, Mike Boxem, Stuart Milstein, Haiyuan Yu, Matija Dreze, Jean Vandenhaute, Kristin C. Gunsalus, Michael E. Cusick, David E. Hill, Jan Tavernier, Frederick P. Roth, Marc Vidal posted to interaction network protein by zwang on 2009-01-05 08:45:26 as along with 2 people roys jbhiatt
	Correlated Evolution of Interacting Proteins: Looking Behind the Mirrortree [My Copy] Journal of Molecular Biology, Vol. 385, No. 1. (09 January 2009), pp. 91-98. by M. Kann, B. Shoemaker, A. Panchenko, T. Przytycka posted to co-evolution interaction protein by zwang on 2008-12-30 06:07:02 as along with 11 people and 2 groups mgomes biomcgary chica druvus sobolevnrm mhofree grahamc barry marti reyez paulschlesinger baker-group Bioinformatics
	Characterization of the steric defense of the HIV-1 gp41 N-trimer region [My Copy] Protein Sci, Vol. 17, No. 12. (1 December 2008), pp. 2091-2100. by Debra M. Eckert, Yu Shi, Sunghwan Kim, et al.Brett D. Welch, Eunchai Kang, Emily S. Poff, Michael S. Kay posted to hiv interaction by zwang on 2008-12-19 08:43:40 as
	Characterization of domain-peptide interaction interface: a generic structure-based model to decipher the binding specificity of SH3 domains [My Copy] Mol Cell Proteomics (20 November 2008), M800450-MCP200. by Tingjun Hou, Zheng Xu, Wei Zhang, et al.William A. Mclaughlin, David A. Case, Yang Xu, Wei Wang posted to binding domain interaction structure by zwang on 2008-11-24 09:01:38 as along with 2 people kgutwin phoenixzxl
	Targeting and tinkering with interaction networks [My Copy] Nature Chemical Biology, Vol. 4, No. 11. (20 October 2008), pp. 666-673. by Robert B. Russell, Patrick Aloy posted to interaction network by zwang on 2008-11-08 04:10:31 as along with 3 people and 1 group lees jperkins chad_davis Orengo Group Journal Picks
	Predicting transcription factor specificity with all-atom models. [My Copy] Nucleic acids research (1 October 2008) by Sahand Jamal J. Rahi, Peter Virnau, Leonid A A. Mirny, Mehran Kardar posted to dna interaction prediction protein structure by zwang on 2008-11-04 09:08:12 as along with 6 people Jporci chrn reyez maximilianh lptolik aalibes

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protein	358
influenza	248
structure	197
evolution	189
interaction	182
virus	155
network	132
prediction	109
rna	89
genome	77
domain	60
yeast	60
sequence	59
gene	54
complex	47
phylogeny	43
transcription	34
rnasep	33
co-evolution	32
avian	30
binding	30
dynamics	29
polymerase	29
mutation	28
folding	27
genome-wide	27
bacterial	26
dna	26
expression	23
motif	23
hemagglutinin	21
alignment	20
clustering	19
modeling	19
regulatory	19
site	19
human	18
antibody	17
eukaryota	17
regulation	16
function	15
genetic	15
design	14
fluorescent	14
drug	13
residue	13
synthetic	13
bayesian	12
metabolism	12
epitope	11
immunity	11
interface	10
microarray	10
pathway	10
promoter	10
algorithm	9
massspectrometry	9
diversity	8
ecoli	8
hiv	8
peptide	8
phenotype	8
bioinformatics	7
computational	7
invivo	7
replication	7
review	7
vaccine	7
y2h	7
chromatin	6
hostspecialization	6
specy	6
system	6
systematic	6
annotation	5
disease	5
fret	5
geneexpression	5
homology	5
insilico	5
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nmr	5
phosphorylation	5
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selection	5
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swine	5
visualization	5
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em	4
experiment	4
genetics	4
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membrane	4
microrna	4
module	4
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nuclear	4
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proteomics	4
purification	4
rule	4
surface	4
svm	4
archaea	3
biofuel	3
cancer	3
cellcycle	3
coil	3
contact	3
deletion	3
element	3
genefamily	3
immune	3
m2	3
methylation	3
np	3
profile	3
protocol	3
reassortment	3
research	3
science	3
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translation	3
ysd	3
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chromosome	2
cloning	2
comparativegenomics	2
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docking	2
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web	2
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similarity	1
singlecell	1
sites	1
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strain	1
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tag	1
tap	1
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text-mining	1
theory	1
threading	1
tissue	1
tlr	1
transmembrane	1
trna	1
vesicle	1
video	1

zwang's interaction [182 articles] Export

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