zwang's phylogeny [43 articles] Export

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	Phylogenetic analysis of modularity in protein interaction networks. [My Copy] BMC bioinformatics, Vol. 10, No. 1. (14 October 2009), 333. by Sinan Erten, Xin Li, Gurkan Bebek, Jing Li, Mehmet Koyutürk posted to protein phylogeny network interaction by zwang on 2009-10-16 03:25:50 as along with 7 people and 2 groups sillitoe biomcgary ppgardne grahamc druvus barriot phoenixzxl Orengo Group Journal Picks Journal picks
	Rapid and Accurate Large-Scale Coestimation of Sequence Alignments and Phylogenetic Trees [My Copy] Science, Vol. 324, No. 5934. (19 June 2009), pp. 1561-1564. by Kevin Liu, Sindhu Raghavan, Serita Nelesen, C. Randal Linder, Tandy Warnow posted to phylogeny sequence by zwang on 2009-06-30 09:19:38 as along with 26 people and 4 groups gjuggler parnell kinestetika robertrentzsch xianjun gdb jbhiatt stajich operon biomcgary kieran101 michaelbarton vingron tatman303 hryk lizbiogen pkonings ppgardne dokky aprasad timflutre inquil TRHvidsten djkt fenghezi phoenixzxl Orengo Group Journal Picks Mycology Journal picks iSEEM
	Phylogenetic and biological characterization of highly pathogenic H5N1 avian influenza viruses (Vietnam 2005) in chickens and ducks [My Copy] Virus Research, Vol. 142, No. 1-2. (June 2009), pp. 108-120. by J. Pfeiffer, M. Pantin-Jackwood, T. L. To, T. Nguyen, D. L. Suarez posted to influenza phylogeny by zwang on 2009-05-19 15:58:07 as
	Inferring Stabilizing Mutations from Protein Phylogenies: Application to Influenza Hemagglutinin [My Copy] PLoS Comput Biol, Vol. 5, No. 4. (17 April 2009), e1000349. by Jesse D. Bloom, Matthew J. Glassman posted to hemagglutinin influenza phylogeny by zwang on 2009-04-18 07:52:28 as along with 1 person friendpine
	Panorama Phylogenetic Diversity and Distribution of Type A Influenza Virus [My Copy] PLoS ONE, Vol. 4, No. 3. (27 March 2009), e5022. by Shuo Liu, Kang Ji, Jiming Chen, et al.Di Tai, Wenming Jiang, Guangyu Hou, Jie Chen, Jinping Li, Baoxu Huang posted to influenza phylogeny virus by zwang on 2009-03-31 08:59:08 as along with 1 person lmichan
	Characterization of Avian Influenza Viruses A (H5N1) from Wild Birds, Hong Kong, 2004–2008 [My Copy] posted to influenza phylogeny by zwang on 2009-03-05 02:14:20 as
	Molecular characterization and phylogenetic analysis of H3N2 human influenza A viruses in Cheongju, South Korea [My Copy] The Journal of Microbiology, Vol. 47, No. 1. (1 February 2009), pp. 91-100. by Yun Baek, Jeung Park, Young Song, et al.Min-Suk Song, Philippe Pascua, Yoon-Soo Hahn, Heon-Seok Han, Ok-Jun Lee, Ki-Soon Kim, Chun Kang, Young-Ki Choi posted to influenza phylogeny virus by zwang on 2009-02-23 06:51:20 as
	A simple, fast, and accurate method of phylogenomic inference [My Copy] Genome Biology, Vol. 9, No. 10. (13 October 2008), R151. by Martin Wu, Jonathan Eisen posted to phylogeny by zwang on 2009-02-09 01:40:46 as along with 12 people and 2 groups dakelley jeargle AaronDarling cgaugain treangen Katje operon ellakat scryrps djkt aramata druvus microbiology_nijmegen iSEEM
	Is Genetic Evolution Predictable? [My Copy] Science, Vol. 323, No. 5915. (6 February 2009), pp. 746-751. by David L. Stern, Virginie Orgogozo posted to evolution phylogeny prediction by zwang on 2009-02-06 06:16:43 as along with 12 people and 1 group emptyhb Scis0000002 anphony provero kshundyak balabu pkonings Zephyrus jjray kaniko RamuAnandakrishnan phoenixzxl R.E.A.D
	Phylogenetic Dependency Networks: Inferring Patterns of CTL Escape and Codon Covariation in HIV-1 Gag [My Copy] posted to hiv network phylogeny by zwang on 2009-02-05 02:29:10 as
	Joint Evolutionary Trees: A Large-Scale Method To Predict Protein Interfaces Based on Sequence Sampling [My Copy] PLoS Comput Biol, Vol. 5, No. 1. (23 January 2009), e1000267. by Stefan Engelen, Ladislas A. Trojan, Sophie Sacquin-Mora, Richard Lavery, Alessandra Carbone posted to interaction interface phylogeny prediction by zwang on 2009-02-05 01:57:13 as along with 3 people phoenixzxl kshameer druvus
	The Population Genetics of dN/dS [My Copy] PLoS Genet, Vol. 4, No. 12. (12 December 2008), e1000304. by Sergey Kryazhimskiy, Joshua B. Plotkin posted to evolution genetics phylogeny by zwang on 2009-01-06 05:19:01 as along with 17 people and 2 groups operon gjuggler seb1 dposada gwallau ilyashl skembel proulx nuin bpcusack Zephyrus balicea renewang stajich michaelbarton druvus djkt R.E.A.D Mycology
	Phylogenetic Approaches to the Study of Extinction [My Copy] Annual Review of Ecology, Evolution, and Systematics, Vol. 39, No. 1. (2008), pp. 301-319. by Andy Purvis posted to evolution phylogeny by zwang on 2008-11-04 04:11:40 as along with 3 people and 2 groups anphony jlgreen lizbiogen iSEEM Green Lab
	Genome-wide nucleotide-level mammalian ancestor reconstruction [My Copy] Genome Research, Vol. 18, 1829. posted to dna evolution genome phylogeny by zwang on 2008-11-03 10:50:45 as
	Efficient and Accurate Construction of Genetic Linkage Maps from the Minimum Spanning Tree of a Graph [My Copy] PLoS Genet, Vol. 4, No. 10. (10 October 2008), e1000212. by Yonghui Wu, Prasanna R. Bhat, Timothy J. Close, Stefano Lonardi posted to evolution phylogeny by zwang on 2008-11-03 10:12:51 as along with 2 people djkt Ema
	Probabilistic Phylogenetic Inference with Insertions and Deletions [My Copy] PLoS Comput Biol, Vol. 4, No. 9. (2008), e1000172. by Elena Rivas, Sean R. Eddy posted to evolution phylogeny by zwang on 2008-10-20 01:59:53 as along with 11 people and 1 group BioNica mhamada treangen pradiptaray nuin timflutre druvus djkt aprasad gjuggler emptyhb iSEEM
	Phylogenetic profiles reveal evolutionary relationships within the “twilight zone” of sequence similarity [My Copy] posted to evolution phylogeny sequence by zwang on 2008-09-05 04:28:21 as
	Phylogenetic inference using whole genomes. [My Copy] Annual review of genomics and human genetics, Vol. 9, No. 1. (2008), pp. 217-231. by Bruce Rannala, Ziheng Yang posted to genome phylogeny by zwang on 2008-09-04 06:33:51 as along with 10 people and 1 group codonusage katholt friendpine inquil gwallau operon treangen druvus aprasad gjuggler LabDros
	Phylogeny-Aware Gap Placement Prevents Errors in Sequence Alignment and Evolutionary Analysis [My Copy] Science, Vol. 320, No. 5883. (20 June 2008), pp. 1632-1635. by Ari Loytynoja, Nick Goldman posted to alignment evolution phylogeny by zwang on 2008-06-25 05:44:44 as along with 29 people and 3 groups memerman operon TRHvidsten BioNica cmzmasek timflutre pradiptaray alexeid marti bpcusack hpaces dinnes gjuggler djkt ArtemPankin phoenixzxl jago marck imtechnology aprasad bmaust bpb michaelbarton Schmidtc AbnerCYH gulsacan emptyhb jlgreen nuin Khavkin's lab iSEEM Green Lab
	The prokaryotic tree of life: past, present...and future? [My Copy] Trends in Ecology & Evolution, Vol. 23, No. 5. (May 2008), pp. 276-281. by James O. Mcinerney, James A. Cotton, Davide Pisani posted to evolution phylogeny prokaryote by zwang on 2008-06-16 01:48:25 as along with 3 people and 2 groups inquil balicea jlgreen Green Lab iSEEM
	Mutual Information Without the Influence of Phylogeny or Entropy Dramatically Improves Residue Contact Prediction [My Copy] Bioinformatics, Vol. 24, No. 3. (5 December 2007), pp. btm604-340. by S. D. Dunn, L. M. Wahl, G. B. Gloor posted to contact interaction mi phylogeny prediction residue by zwang on 2008-05-09 02:44:06 as along with 5 people and 1 group mgomes qluo bicko sobolevnrm marck baker-group
	Calculating Bootstrap Probabilities of Phylogeny Using Multilocus Sequence Data [My Copy] Mol Biol Evol, Vol. 25, No. 5. (1 May 2008), pp. 960-971. by Tae-Kun Seo posted to bootstrap evolution phylogeny sequence by zwang on 2008-04-15 05:10:40 as along with 2 people skembel adacier
	Bayesian support is larger than bootstrap support in phylogenetic inference: a mathematical argument [My Copy] Math Med Biol, Vol. 24, No. 4. (1 December 2007), pp. 401-411. by Tom Britton, Bodil Svennblad, Per Erixon, Bengt Oxelman posted to bayesian bootstrap phylogeny by zwang on 2008-03-16 15:10:59 as along with 1 person adacier
	A Comprehensive Phylogeny of Beetles Reveals the Evolutionary Origins of a Superradiation [My Copy] Science, Vol. 318, No. 5858. (21 December 2007), pp. 1913-1916. by Toby Hunt, Johannes Bergsten, Zuzana Levkanicova, et al.Anna Papadopoulou, Oliver S. John, Ruth Wild, Peter M. Hammond, Dirk Ahrens, Michael Balke, Michael S. Caterino, Jesus Gomez-Zurita, Ignacio Ribera, Timothy G. Barraclough, Milada Bocakova, Ladislav Bocak, Alfried P. Vogler posted to evolution phylogeny by zwang on 2007-12-21 09:47:02 as along with 3 people niallhaslam dinnes youdon
	Predicting Protein Function with Hierarchical Phylogenetic Profiles: The Gene3D Phylo-Tuner Method Applied to Eukaryotic Genomes [My Copy] PLoS Computational Biology, Vol. 3, No. 11. (1 November 2007), e237. by Juan A. Ranea, Corin Yeats, Alastair Grant, Christine A. Orengo posted to eukaryota genome hierarchical phylogeny prediction protein by zwang on 2007-12-10 04:43:48 as along with 5 people and 1 group marti eckart_bindewald skhadar asddd hpaces Orengo Group functional genomics watchlist
	Plant-Animal Mutualistic Networks: The Architecture of Biodiversity [My Copy] Annual Review of Ecology, Evolution, and Systematics, Vol. 38, No. 1., 567. posted to architecture diversity evolution network phylogeny by zwang on 2007-12-08 09:01:17 as
	Evolution of genes and genomes on the Drosophila phylogeny [My Copy] Nature, Vol. 450, No. 7167. (08 November 2007), pp. 203-218. posted to evolution gene genome phylogeny by zwang on 2007-11-20 09:04:25 as along with 36 people and 5 groups biomcgary nuttpo daveGerrard Anachff GustavoLacerda mqbphcw3 rpetrenko gwallau chica jlncdr aprasad gjuggler lizbiogen jbsaltz druvus pradiptaray pengchy operon tmmurali indigoviolet djkt timflutre stajich Garamonfok lp2 CharlesM hpaces caseybrown emptyhb urgi noor PetrovLab isimpson balicea cisevol hdopazo Bioinformatics EisenLab Mycology BergmanLab Drosophila-Genetics-Genomics-2008
	Constraint-based functional similarity of metabolic genes: going beyond network topology [My Copy] Bioinformatics, Vol. 23, No. 16. (15 August 2007), pp. 2139-2146. by Oleg Rokhlenko, Tomer Shlomi, Roded Sharan, Eytan Ruppin, Ron Y. Pinter posted to gene network phylogeny by zwang on 2007-09-17 09:39:55 as along with 1 person ptrobajo
	SimulFold: Simultaneously Inferring RNA Structures Including Pseudoknots, Alignments, and Trees Using a Bayesian MCMC Framework [My Copy] PLoS Computational Biology, Vol. 3, No. 8. (1 August 2007), e149. by Irmtraud M. Meyer, István Miklós posted to alignment bayesian phylogeny rna structure by zwang on 2007-09-13 17:47:28 as along with 3 people raylim cabbagezs bertelsen
	New Taxonomy and the Origin of Species [My Copy] PLoS Biology, Vol. 5, No. 7. (1 July 2007), e194. by Shai Meiri, Georgina M. Mace posted to evolution phylogeny specy by zwang on 2007-08-29 02:19:57 as along with 1 person asddd
	Non-random coextinctions in phylogenetically structured mutualistic networks. [My Copy] Nature, Vol. 448, No. 7156. (23 August 2007), pp. 925-928. by Enrico L. Rezende, Jessica E. Lavabre, Paulo R. Guimarães, Pedro Jordano, Jordi Bascompte posted to co-extinction mutation network phylogeny by zwang on 2007-08-28 04:03:13 as along with 3 people biomcgary kubyaddi cmm
	Toward Resolving the Eukaryotic Tree: The Phylogenetic Positions of Jakobids and Cercozoans [My Copy] Current Biology, Vol. 17, No. 16. (21 August 2007), pp. 1420-1425. by Naiara Rodriguez-Ezpeleta, Henner Brinkmann, Gertraud Burger, et al.Andrew J. Roger, Michael W. Gray, Herve Philippe, Franz B. Lang posted to eukaryota evolution phylogeny specy by zwang on 2007-08-28 04:01:45 as along with 1 person asddd
	Phylogenetic analysis of condensation domains in NRPS sheds light on their functional evolution [My Copy] BMC Evolutionary Biology, Vol. 7 (16 May 2007), 78. by Chrstian Rausch, Ilka Hoof, Tilmann Weber, Wolfgang Wohlleben, Daniel H. Huson posted to domain evolution phylogeny by zwang on 2007-06-14 02:21:21 as along with 1 person pradiptaray
	A Systematics for Discovering the Fundamental Units of Bacterial Diversity [My Copy] posted to bacterial diversity evolution phylogeny review by zwang on 2007-05-28 02:04:48 as
	Phylogenetic exploration of bacterial genomic rearrangements [My Copy] Bioinformatics, Vol. 23, No. 9. (1 May 2007), pp. 1172-1174. by Romain Fremez, Thomas Faraut, Gwennaele Fichant, Jerome Gouzy, Yves Quentin posted to bacterial genome phylogeny by zwang on 2007-05-10 08:13:26 as along with 3 people druvus treangen operon
	Deciphering RNA structural diversity and systematic phylogeny from microbial metagenomes [My Copy] Nucl. Acids Res., Vol. 35, No. 7. (1 April 2007), pp. 2283-2294. by Yanglong Zhu, Dileep K. Pulukkunat, Yong Li posted to diversity phylogeny rna structure by zwang on 2007-05-08 12:14:37 as
	A Phylogenetic Method for Detecting Positive Epistasis in Gene Sequences and Its Application to RNA Virus Evolution [My Copy] Mol Biol Evol, Vol. 23, No. 9. (1 September 2006), pp. 1724-1730. by Beth Shapiro, Andrew Rambaut, Oliver G. Pybus, Edward C. Holmes posted to evolution phylogeny positiveepistasis by zwang on 2007-04-16 14:16:08 as along with 1 person and 1 group stevanspringer FAB-lab
	Phylogenetic tree information aids supervised learning for predicting protein-protein interaction based on distance matrices [My Copy] BMC Bioinformatics, Vol. 8 (09 January 2007), 6. by Roger A. Craig, Li Liao posted to interaction phylogeny prediction protein by zwang on 2007-04-16 13:57:11 as along with 2 people marti iris_2001
	Using Phylogeny to Improve Genome-Wide Distant Homology Recognition [My Copy] PLoS Computational Biology, Vol. 3, No. 1. (1 January 2007), e3. by Sanne Abeln, Carlo Teubner, Charlotte M. Deane posted to genome-wide homology phylogeny by zwang on 2007-04-12 10:35:42 as
	High-resolution species trees without concatenation [My Copy] Proceedings of the National Academy of Sciences, Vol. 104, No. 14. (3 April 2007), pp. 5936-5941. by Scott V. Edwards, Liang Liu, Dennis K. Pearl posted to phylogeny specy by zwang on 2007-04-06 05:45:14 as along with 8 people and 1 group lizbiogen robfsouza treangen druvus alexeid stevanspringer operon aprasad FAB-lab
	Measures of Clade Confidence Do Not Correlate with Accuracy of Phylogenetic Trees [My Copy] PLoS Computational Biology, Vol. 3, No. 3. (1 March 2007), e51. by Barry G. Hall, Stephen J. Salipante posted to accuracy clade confidence phylogeny by zwang on 2007-04-02 09:10:51 as along with 2 people druvus operon
	Phylogenetic Methodology for Detecting Protein Interactions [My Copy] Mol Biol Evol, Vol. 24, No. 3. (1 March 2007), pp. 650-659. by Peter J. Waddell, Hirohisa Kishino, Rissa Ota posted to interaction phylogeny protein by zwang on 2007-03-30 08:51:26 as along with 2 people and 1 group stevanspringer tale FAB-lab
	Global molecular phylogeography reveals persistent Arctic circumpolar isolation in a marine planktonic protist [My Copy] PNAS, Vol. 104, No. 12. (20 March 2007), pp. 5002-5007. by Kate F. Darling, Michal Kucera, Christopher M. Wade posted to phylogeny phylogeography by zwang on 2007-03-23 10:01:27 as

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protein	358
influenza	248
structure	197
evolution	189
interaction	182
virus	155
network	132
prediction	109
rna	89
genome	77
domain	60
yeast	60
sequence	59
gene	54
complex	47
phylogeny	43
transcription	34
rnasep	33
co-evolution	32
avian	30
binding	30
dynamics	29
polymerase	29
mutation	28
folding	27
genome-wide	27
bacterial	26
dna	26
expression	23
motif	23
hemagglutinin	21
alignment	20
clustering	19
modeling	19
regulatory	19
site	19
human	18
antibody	17
eukaryota	17
regulation	16
function	15
genetic	15
design	14
fluorescent	14
drug	13
residue	13
synthetic	13
bayesian	12
metabolism	12
epitope	11
immunity	11
interface	10
microarray	10
pathway	10
promoter	10
algorithm	9
massspectrometry	9
diversity	8
ecoli	8
hiv	8
peptide	8
phenotype	8
bioinformatics	7
computational	7
invivo	7
replication	7
review	7
vaccine	7
y2h	7
chromatin	6
hostspecialization	6
specy	6
system	6
systematic	6
annotation	5
disease	5
fret	5
geneexpression	5
homology	5
insilico	5
mammal	5
nmr	5
phosphorylation	5
prokaryote	5
selection	5
substitution	5
subunit	5
swine	5
visualization	5
antigen	4
architecture	4
assembly	4
divergence	4
em	4
experiment	4
genetics	4
hierarchical	4
histone	4
localization	4
membrane	4
microrna	4
module	4
ncrna	4
nuclear	4
ortholog	4
proteomics	4
purification	4
rule	4
surface	4
svm	4
archaea	3
biofuel	3
cancer	3
cellcycle	3
coil	3
contact	3
deletion	3
element	3
genefamily	3
immune	3
m2	3
methylation	3
np	3
profile	3
protocol	3
reassortment	3
research	3
science	3
secondary	3
simulation	3
translation	3
ysd	3
accuracy	2
bifc	2
bootstrap	2
bret	2
chaperone	2
chromosome	2
cloning	2
comparativegenomics	2
cooccurrence	2
database	2
docking	2
endogenous	2
epistasis	2
fitness	2
homologymodeling	2
hub	2
information-theory	2
inhibition	2
likelihood	2
linker	2
mathematic	2
mhc	2
mi	2
molecularrecognition	2
mp	2
neural	2
ns	2
phylogeography	2
positiveselection	2
presentation	2
primer	2
ribozyme	2
singlemolecule	2
stability	2
target	2
technique	2
viability	2
web	2
bsi	1
clade	1
coevolution	1
co-extinction	1
collaboration	1
compensatory	1
confidence	1
counter	1
cpg-island	1
culture	1
degradation	1
detection	1
differentiation	1
duplication	1
ecology	1
emulation	1
enzyme	1
epigenetics	1
fuck	1
geneontology	1
generegulation	1
hgt	1
hla	1
hmm	1
immunohistochemistry	1
inhibitor	1
integration	1
invitro	1
lgt	1
magnetic	1
marker	1
model	1
morphological	1
mrp	1
nanopore	1
nanoscale	1
nature	1
neoselection	1
noise	1
oligonucleotide	1
oral	1
pathobiology	1
pca	1
plant	1
positiveepistasis	1
protection	1
qtl	1
reliability	1
reverse-engineering	1
ribosome	1
sampling	1
sequencing	1
similarity	1
singlecell	1
sites	1
social	1
speciation	1
statistical	1
strain	1
substrate_recognition	1
tag	1
tap	1
terminator	1
text-mining	1
theory	1
threading	1
tissue	1
tlr	1
transmembrane	1
trna	1
vesicle	1
video	1

zwang's phylogeny [43 articles] Export

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