zwang's prediction [109 articles] Export

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	Predicting new molecular targets for known drugs [My Copy] Nature, Vol. 462, No. 7270. (01 November 2009), pp. 175-181. by Michael J. Keiser, Vincent Setola, John J. Irwin, et al.Christian Laggner, Atheir I. Abbas, Sandra J. Hufeisen, Niels H. Jensen, Michael B. Kuijer, Roberto C. Matos, Thuy B. Tran, Ryan Whaley, Richard A. Glennon, Jerome Hert, Kelan L. H. Thomas, Douglas D. Edwards, Brian K. Shoichet, Bryan L. Roth posted to structure prediction drug by zwang on 2009-11-12 08:53:52 as along with 14 people and 1 group venancio okapi ahmetbakan zufar pablocarb TRHvidsten phoenixzxl qshao Yanno mnishimu tmmurali sjcockell seb1 abhishek_tiwari Journal picks
	Simultaneous prediction of protein folding and docking at high resolution [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 45. (10 November 2009), pp. 18978-18983. by Rhiju Das, Ingemar AndrÃ©, Yang Shen, et al.Yibing Wu, Alexander Lemak, Sonal Bansal, Cheryl H. Arrowsmith, Thomas Szyperski, David Baker posted to protein prediction folding by zwang on 2009-11-11 10:39:19 as along with 4 people ahmetbakan paulschlesinger apaydin ibuch
	Prediction of hot spot residues at protein-protein interfaces by combining machine learning and energy-based methods [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (30 October 2009), 365. by Stefano Lise, Cedric Archambeau, Massimiliano Pontil, David Jones posted to residue protein prediction interface by zwang on 2009-11-04 09:10:52 as along with 6 people and 1 group sillitoe apaydin kshameer phoenixzxl higueruelo neils Orengo Group Journal Picks
	Prediction of antigenic epitopes on protein surfaces by consensus scoring [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 302. by Shide Liang, Dandan Zheng, Chi Zhang, Martin Zacharias posted to protein prediction epitope by zwang on 2009-09-24 08:06:34 as along with 2 people phoenixzxl niallhaslam
	Restriction versus guidance in protein structure prediction [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 36. (8 September 2009), pp. 15302-15307. by Joseph A. Hegler, Joachim LÃ¤tzer, Amarda Shehu, Cecilia Clementi, Peter G. Wolynes posted to structure protein prediction by zwang on 2009-08-31 15:12:45 as along with 2 people mkotlyar carlosjavierna
	Analysis of the Free-Energy Surface of Proteins from Reversible Folding Simulations [My Copy] PLoS Comput Biol, Vol. 5, No. 7. (10 July 2009), e1000428. by Lucy R. Allen, Sergei V. Krivov, Emanuele Paci posted to structure protein prediction by zwang on 2009-08-27 11:40:53 as along with 2 people melo_mcr Diego_Prada
	Multi-level learning: improving the prediction of protein, domain and residue interactions by allowing information flow between levels [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 241. by Kevin Yip, Philip Kim, Drew McDermott, Mark Gerstein posted to prediction interaction by zwang on 2009-08-27 06:59:48 as along with 8 people and 1 group flbarroso jago gwallau installe barriot kshameer peteruetz phoenixzxl Simulation of operations and interactions
	The Validation and Assessment of Machine Learning: A Game of Prediction from High-Dimensional Data [My Copy] PLoS ONE, Vol. 4, No. 8. (4 August 2009), e6287. by Tune H. Pers, Anders Albrechtsen, Claus Holst, Thorkild I. A. Sørensen, Thomas A. Gerds posted to prediction by zwang on 2009-08-27 06:59:18 as along with 6 people daforerog rdiaz phoenixzxl installe operon frohike
	Sequence physical properties encode the global organization of protein structure space [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 34. (25 August 2009), pp. 14345-14348. by S. Rackovsky posted to structure sequence protein prediction by zwang on 2009-08-27 02:47:10 as along with 3 people phoenixzxl roys kevinchannon
	Supervised prediction of drug-target interactions using bipartite local models [My Copy] Bioinformatics, Vol. 25, No. 18. (15 September 2009), pp. 2397-2403. by Kevin Bleakley, Yoshihiro Yamanishi posted to interaction prediction by zwang on 2009-07-22 10:26:08 as along with 4 people mingzhi ptrobajo apocapoc phoenixzxl
	Dating the emergence of pandemic influenza viruses [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 28. (14 July 2009), pp. 11709-11712. by Gavin J. D. Smith, Justin Bahl, Dhanasekaran Vijaykrishna, et al.Jinxia Zhang, Leo L. M. Poon, Honglin Chen, Robert G. Webster, J. S. Malik Peiris, Yi Guan posted to influenza prediction virus by zwang on 2009-07-22 08:55:50 as along with 4 people and 1 group memerman wsjames phoenixzxl awils1 Oxford Virology
	FRED - A Framework for T-cell Epitope Detection [My Copy] Bioinformatics (4 July 2009), btp409. by Magdalena Feldhahn, Pierre Donnes, Philipp Thiel, Oliver Kohlbacher posted to epitope immunity prediction by zwang on 2009-07-06 07:04:18 as
	Prediction of protein-protein interactions: a study of the co-evolution model. [My Copy] Methods in molecular biology (Clifton, N.J.), Vol. 541 (2009), pp. 61-88. by Itai Sharon, Jason V. Davis, Golan Yona posted to co-evolution interaction prediction protein by zwang on 2009-06-30 09:20:42 as along with 3 people chica kgutwin phoenixzxl
	Improved beta-protein structure prediction by multilevel optimization of nonlocal strand pairings and local backbone conformation [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2006), NA. by Philip Bradley, David Baker posted to prediction protein structure by zwang on 2009-06-11 13:52:03 as along with 2 people dgront wouterboomsma
	The Roles of Entropy and Kinetics in Structure Prediction [My Copy] PLoS ONE, Vol. 4, No. 6. (9 June 2009), e5840. by Gregory R. Bowman, Vijay S. Pande posted to prediction structure by zwang on 2009-06-11 03:47:45 as along with 1 person kiekyon
	Protein function annotation from sequence: prediction of residues interacting with RNA [My Copy] Bioinformatics (23 April 2009), btp257. by R. V. Spriggs, Y. Murakami, H. Nakamura, S. Jones posted to function interaction prediction rna sequence by zwang on 2009-04-25 07:40:25 as along with 2 people operon phoenixzxl
	Domain Interaction Footprint: a multi-classification approach to predict domain-peptide interactions [My Copy] Bioinformatics, Vol. 25, No. 13. (1 July 2009), pp. 1632-1639. by Christian Schillinger, Prisca Boisguerin, Gerd Krause posted to domain interaction prediction by zwang on 2009-04-22 02:11:39 as along with 3 people and 1 group ollieredfernwork kshameer phoenixzxl Orengo Group Journal Picks
	A Top-Down Approach to Infer and Compare Domain-Domain Interactions across Eight Model Organisms [My Copy] PLoS ONE, Vol. 4, No. 3. (31 March 2009), e5096. by Chittibabu Guda, Brian R. King, Lipika R. Pal, Purnima Guda posted to domain interaction prediction by zwang on 2009-04-02 09:47:10 as along with 1 person phoenixzxl
	Possibility of Mutation Prediction of Influenza Hemagglutinin by Combination of Hemadsorption Experiment and Quantum Chemical Calculation for Antibody Binding. [My Copy] The journal of physical chemistry. B (26 March 2009) by Kazutomo Takematsu, Kaori Fukuzawa, Katsumi Omagari, et al.Setsuko Nakajima, Katsuhisa Nakajima, Yuji Mochizuki, Tatsuya Nakano, Hirofumi Watanabe, Shigenori Tanaka posted to antibody binding hemagglutinin influenza prediction by zwang on 2009-03-31 09:29:41 as
	Predicting protein evolution in vitro by phage escape technology. [My Copy] Molecular bioSystems, Vol. 5, No. 2. (February 2009), pp. 128-133. by A. S. Rohrbach, T. J. Dickerson posted to evolution prediction protein virus by zwang on 2009-03-31 09:21:44 as
	Protein structure prediction: when is it useful? [My Copy] Current Opinion in Structural Biology (25 March 2009) by Yang Zhang posted to prediction protein structure by zwang on 2009-03-31 09:02:29 as along with 3 people Jporci paulschlesinger phoenixzxl
	Predicting helix-helix interactions from residue contacts in membrane proteins [My Copy] Bioinformatics, Vol. 25, No. 8. (15 April 2009), pp. 996-1003. by Allan Lo, Yi-Yuan Chiu, Einar A. Rodland, Ping-Chiang Lyu, Ting-Yi Sung, Wen-Lian Hsu posted to interaction prediction protein residue by zwang on 2009-03-05 02:07:37 as along with 6 people xdeupi ChanghuiYan george_g friendpine neils phoenixzxl
	Real value prediction of protein solvent accessibility using enhanced PSSM features [My Copy] BMC Bioinformatics, Vol. 9, No. Suppl 12. (2008) by Darby Chang, Hsuan Y. Huang, Yu T. Syu, Chih P. Wu posted to prediction protein by zwang on 2009-03-05 02:04:50 as
	Predicting RNA-binding sites of proteins using support vector machines and evolutionary information [My Copy] BMC Bioinformatics, Vol. 9, No. Suppl 12. (2008), S6. by Cheng W. Cheng, Emily Su, Jenn K. Hwang, Ting Y. Sung, Wen L. Hsu posted to binding evolution prediction protein site svm by zwang on 2009-03-05 02:03:52 as along with 3 people balewis iaolier phoenixzxl
	Mimicking the folding pathway to improve homology-free protein structure prediction [My Copy] Proceedings of the National Academy of Sciences (23 February 2009) by Joe Debartolo, Andrés Colubri, Abhishek K. Jha, James E. Fitzgerald, Karl F. Freed, Tobin R. Sosnick posted to homology prediction protein structure by zwang on 2009-02-24 07:43:58 as along with 2 people apaydin paulschlesinger
	Is Genetic Evolution Predictable? [My Copy] Science, Vol. 323, No. 5915. (6 February 2009), pp. 746-751. by David L. Stern, Virginie Orgogozo posted to evolution phylogeny prediction by zwang on 2009-02-06 06:16:43 as along with 12 people and 1 group emptyhb Scis0000002 anphony provero kshundyak balabu pkonings Zephyrus jjray kaniko RamuAnandakrishnan phoenixzxl R.E.A.D
	ElliPro: a new structure-based tool for the prediction of antibody epitopes. [My Copy] BMC bioinformatics, Vol. 9 (02 December 2008), 514. by Julia Ponomarenko, Huynh-Hoa H. Bui, Wei Li, et al.Nicholas Fusseder, Philip E. Bourne, Alessandro Sette, Bjoern Peters posted to epitope prediction structure by zwang on 2009-02-05 03:15:59 as along with 3 people niallhaslam higueruelo phoenixzxl
	Joint Evolutionary Trees: A Large-Scale Method To Predict Protein Interfaces Based on Sequence Sampling [My Copy] PLoS Comput Biol, Vol. 5, No. 1. (23 January 2009), e1000267. by Stefan Engelen, Ladislas A. Trojan, Sophie Sacquin-Mora, Richard Lavery, Alessandra Carbone posted to interaction interface phylogeny prediction by zwang on 2009-02-05 01:57:13 as along with 3 people phoenixzxl kshameer druvus
	Prediction of membrane protein structures with complex topologies using limited constraints [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 5. (3 February 2009), pp. 1409-1414. by P. Barth, B. Wallner, D. Baker posted to complex prediction protein structure by zwang on 2009-02-05 01:28:49 as along with 10 people and 2 groups rph dgront sebk barry krapnik viktor21614 paulschlesinger apaydin agrossfield amishp OPIG structural_bioinformatics
	Structure - Prediction of Protein-Protein Interface Sequence Diversity Using Flexible Backbone Computational Protein Design [My Copy] posted to interaction prediction protein structure by zwang on 2009-01-06 03:07:11 as
	Structure Prediction of Domain Insertion Proteins from Structures of Individual Domains [My Copy] Structure, Vol. 16, No. 4. (8 April 2008), pp. 513-527. by Monica Berrondo, Marc Ostermeier, Jeffrey J. Gray posted to domain peptide prediction structure by zwang on 2008-11-12 01:40:59 as along with 2 people raik choonpeng
	Predicting transcription factor specificity with all-atom models. [My Copy] Nucleic acids research (1 October 2008) by Sahand Jamal J. Rahi, Peter Virnau, Leonid A A. Mirny, Mehran Kardar posted to dna interaction prediction protein structure by zwang on 2008-11-04 09:08:12 as along with 6 people Jporci chrn reyez maximilianh lptolik aalibes
	Discarding Functional Residues from the Substitution Table Improves Predictions of Active Sites within Three-Dimensional Structures [My Copy] PLoS Comput Biol, Vol. 4, No. 10. (3 October 2008), e1000179. by Sungsam Gong, Tom L. Blundell posted to prediction residue structure substitution by zwang on 2008-11-03 09:15:32 as along with 7 people sebk ssgong gjuggler joseph_x_zhou bicko massivemayhem reyez
	Computational prediction of small-molecule catalysts [My Copy] Nature, Vol. 455, No. 7211. (17 September 2008), pp. 309-313. by K. N. Houk, Paul H. Cheong posted to prediction structure by zwang on 2008-10-16 14:04:21 as
	Accurate prediction of stability changes in protein mutants by combining machine learning with structure based computational mutagenesis [My Copy] Bioinformatics, Vol. 24, No. 18. (15 September 2008), pp. 2002-2009. by Majid Masso, Iosif I. Vaisman posted to prediction protein stability structure svm by zwang on 2008-10-09 08:57:06 as along with 4 people medic0747 phoenixzxl kluck afon
	Structure-Guided Comparative Analysis of Proteins: Principles, Tools, and Applications for Predicting Function [My Copy] PLoS Comput Biol, Vol. 4, No. 9. (2008), e1000151. by Raja Mazumder, Sona Vasudevan posted to function prediction protein structure by zwang on 2008-10-07 11:19:53 as along with 9 people and 2 groups i000 pengchy raik chad_davis druvus reyez mdstobbe barry jameswasmuth structural_bioinformatics Bioinformatics
	Predicting PDZ domain–peptide interactions from primary sequences [My Copy] Nature Biotechnology, Vol. 26, No. 9. (17 August 2008), pp. 1041-1045. by Jiunn R. Chen, Bryan H. Chang, John E. Allen, Michael A. Stiffler, Gavin Macbeath posted to domain interaction prediction protein by zwang on 2008-09-10 07:31:56 as along with 5 people Evangelia yzlab phoenixzxl guhjy cabbagesofdoom
	Network-based prediction of human tissue-specific metabolism. [My Copy] Nature biotechnology, Vol. 26, No. 9. (17 September 2008), pp. 1003-1010. by Tomer Shlomi, Moran N. Cabili, Markus J. Herrgård, Bernhard Ø. Palsson, Eytan Ruppin posted to metabolism network prediction by zwang on 2008-09-10 07:26:54 as along with 11 people grahamc yaredo Sonix jfr roys mdstobbe klo peterli ptrobajo renatomilani guhjy
	Optimal Design of Thermally Stable Proteins [My Copy] Bioinformatics (22 August 2008), btn450. by Vanitha Suresh, Ryan M. Bannen, George N. Phillips, Stephen J. Wright, Julie C. Mitchell posted to design prediction protein structure by zwang on 2008-08-27 07:30:16 as along with 2 people friendpine phoenixzxl
	InSite: a computational method for identifying protein-protein interaction binding sites on a proteome-wide scale [My Copy] Genome Biology, Vol. 8 (14 September 2007), R192. by Haidong Wang, Eran Segal, Asa Ben-Hur, Qianru Li, Marc Vidal, Daphne Koller posted to binding interaction prediction protein sites by zwang on 2008-08-22 09:47:16 as along with 3 people Jporci cjeans carlk
	An integrative approach for predicting interactions of protein regions [My Copy] Bioinformatics, Vol. 24, No. 16. (15 August 2008), pp. i35-41. by Sven-Eric Schelhorn, Thomas Lengauer, Mario Albrecht posted to domain interaction prediction protein by zwang on 2008-08-11 04:13:26 as along with 4 people phoenixzxl Jporci neils kluck
	Coevolution at protein complex interfaces can be detected by the complementarity trace with important impact for predictive docking [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 22. (3 June 2008), pp. 7708-7713. by Hocine Madaoui, RaphaÃ«l Guerois posted to co-evolution interaction interface prediction structure by zwang on 2008-08-06 07:42:22 as along with 8 people dfdong qluo robfsouza RebeccaHamer orr cabbagesofdoom phoenixzxl bicko
	Predicting and Validating Protein Interactions Using Network Structure [My Copy] PLoS Comput Biol, Vol. 4, No. 7. (25 July 2008), e1000118. by Pao-Yang Chen, Charlotte M. Deane, Gesine Reinert posted to interaction network prediction protein structure by zwang on 2008-07-30 03:51:04 as along with 5 people TRHvidsten icq242500260 phoenixzxl roys mingzhi
	ProCope - Protein Complex Prediction and Evaluation [My Copy] Bioinformatics (17 July 2008), btn376. by Jan Krumsiek, Caroline C. Friedel, Ralf Zimmer posted to complex prediction protein by zwang on 2008-07-26 10:52:18 as along with 4 people carlk saket guhjy chad_davis
	PIGS: Automatic prediction of antibody structures [My Copy] Bioinformatics (19 July 2008), btn341. by Paolo Marcatili, Alessandra Rosi, Anna Tramontano posted to antibody prediction structure by zwang on 2008-07-26 10:47:53 as along with 1 person niallhaslam
	Predicting protein folding pathways at the mesoscopic level based on native interactions between secondary structure elements [My Copy] BMC Bioinformatics, Vol. 9 (23 July 2008), 320. by Qingwu Yang, Sing-Hoi Sze posted to folding interaction prediction protein structure by zwang on 2008-07-26 10:43:26 as
	Tertiary Interactions Determine the Accuracy of RNA Folding [My Copy] posted to folding prediction rna by zwang on 2008-07-13 08:36:12 as
	Predicting protein function from domain content [My Copy] Bioinformatics (30 June 2008), btn312. by Kristoffer Forslund, Erik L. Sonnhammer posted to domain prediction protein by zwang on 2008-07-01 02:44:42 as along with 5 people phoenixzxl laurenbragg saket druvus reyez
	Progress and challenges in protein structure prediction [My Copy] Current Opinion in Structural Biology In Nucleic acids / Sequences and topology, Vol. 18, No. 3. (June 2008), pp. 342-348. by Y. Zhang posted to prediction protein structure by zwang on 2008-06-27 03:37:25 as along with 11 people saunders ameetsoni rodrigofaccioli jperkins newton1234 hadesnumb kgutwin chad_davis barry phoenixzxl marck
	Using support vector machine combined with auto covariance to predict protein-protein interactions from protein sequences [My Copy] Nucl. Acids Res. (4 April 2008), gkn159. by Yanzhi Guo, Lezheng Yu, Zhining Wen, Menglong Li posted to interaction prediction protein svm by zwang on 2008-06-16 03:51:12 as along with 4 people guhjy marck phoenixzxl tmmurali

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protein	358
influenza	248
structure	197
evolution	189
interaction	182
virus	155
network	132
prediction	109
rna	89
genome	77
domain	60
yeast	60
sequence	59
gene	54
complex	47
phylogeny	43
transcription	34
rnasep	33
co-evolution	32
avian	30
binding	30
dynamics	29
polymerase	29
mutation	28
folding	27
genome-wide	27
bacterial	26
dna	26
expression	23
motif	23
hemagglutinin	21
alignment	20
clustering	19
modeling	19
regulatory	19
site	19
human	18
antibody	17
eukaryota	17
regulation	16
function	15
genetic	15
design	14
fluorescent	14
drug	13
residue	13
synthetic	13
bayesian	12
metabolism	12
epitope	11
immunity	11
interface	10
microarray	10
pathway	10
promoter	10
algorithm	9
massspectrometry	9
diversity	8
ecoli	8
hiv	8
peptide	8
phenotype	8
bioinformatics	7
computational	7
invivo	7
replication	7
review	7
vaccine	7
y2h	7
chromatin	6
hostspecialization	6
specy	6
system	6
systematic	6
annotation	5
disease	5
fret	5
geneexpression	5
homology	5
insilico	5
mammal	5
nmr	5
phosphorylation	5
prokaryote	5
selection	5
substitution	5
subunit	5
swine	5
visualization	5
antigen	4
architecture	4
assembly	4
divergence	4
em	4
experiment	4
genetics	4
hierarchical	4
histone	4
localization	4
membrane	4
microrna	4
module	4
ncrna	4
nuclear	4
ortholog	4
proteomics	4
purification	4
rule	4
surface	4
svm	4
archaea	3
biofuel	3
cancer	3
cellcycle	3
coil	3
contact	3
deletion	3
element	3
genefamily	3
immune	3
m2	3
methylation	3
np	3
profile	3
protocol	3
reassortment	3
research	3
science	3
secondary	3
simulation	3
translation	3
ysd	3
accuracy	2
bifc	2
bootstrap	2
bret	2
chaperone	2
chromosome	2
cloning	2
comparativegenomics	2
cooccurrence	2
database	2
docking	2
endogenous	2
epistasis	2
fitness	2
homologymodeling	2
hub	2
information-theory	2
inhibition	2
likelihood	2
linker	2
mathematic	2
mhc	2
mi	2
molecularrecognition	2
mp	2
neural	2
ns	2
phylogeography	2
positiveselection	2
presentation	2
primer	2
ribozyme	2
singlemolecule	2
stability	2
target	2
technique	2
viability	2
web	2
bsi	1
clade	1
coevolution	1
co-extinction	1
collaboration	1
compensatory	1
confidence	1
counter	1
cpg-island	1
culture	1
degradation	1
detection	1
differentiation	1
duplication	1
ecology	1
emulation	1
enzyme	1
epigenetics	1
fuck	1
geneontology	1
generegulation	1
hgt	1
hla	1
hmm	1
immunohistochemistry	1
inhibitor	1
integration	1
invitro	1
lgt	1
magnetic	1
marker	1
model	1
morphological	1
mrp	1
nanopore	1
nanoscale	1
nature	1
neoselection	1
noise	1
oligonucleotide	1
oral	1
pathobiology	1
pca	1
plant	1
positiveepistasis	1
protection	1
qtl	1
reliability	1
reverse-engineering	1
ribosome	1
sampling	1
sequencing	1
similarity	1
singlecell	1
sites	1
social	1
speciation	1
statistical	1
strain	1
substrate_recognition	1
tag	1
tap	1
terminator	1
text-mining	1
theory	1
threading	1
tissue	1
tlr	1
transmembrane	1
trna	1
vesicle	1
video	1

zwang's prediction [109 articles] Export

zwang's tags