zwang's rna [89 articles] Export

Recent papers added to zwang's library classified by the tag rna. You can also see everyone's rna.

	Mechanisms and functional implications of the degradation of host RNA polymerase II in influenza virus infected cells. [My Copy] Virology (27 October 2009) by Frank T. Vreede, Annie Y. Chan, Jane Sharps, Ervin Fodor posted to rna polymerase influenza by zwang on 2009-11-10 08:01:58 as
	Time-resolved RNA SHAPE chemistry: quantitative RNA structure analysis in one-second snapshots and at single-nucleotide resolution [My Copy] Nature Protocols, Vol. 4, No. 10. (10 September 2009), pp. 1413-1421. by Stefanie A. Mortimer, Kevin M. Weeks posted to structure rna by zwang on 2009-10-20 07:38:29 as
	Knowledge-Based Instantiation of Full Atomic Detail into Coarse Grain RNA 3D Structural Models [My Copy] Bioinformatics (7 October 2009), btp576. by Magdalena A. Jonikas, Randall J. Radmer, Russ B. Altman posted to structure rna model by zwang on 2009-10-14 09:45:06 as
	Human H1 promoter expressed short hairpin RNAs (shRNAs) suppress avian influenza virus replication in chicken CH-SAH and canine MDCK cells [My Copy] Antiviral Research, Vol. 84, No. 2. (06 November 2009), pp. 159-167. by Arusyak Abrahamyan, Éva Nagy, Serguei P. Golovan posted to virus rna replication inhibitor influenza human by zwang on 2009-10-10 09:32:54 as
	Predicting RNA secondary structure based on the class information and Hopfield network [My Copy] Computers in Biology and Medicine, Vol. 39, No. 3. (March 2009), pp. 206-214. by Quan Zou, Tuo Zhao, Yang Liu, Maozu Guo posted to structure rna network by zwang on 2009-08-15 15:33:35 as
	Patterns of Oligonucleotide Sequences in Viral and Host Cell RNA Identify Mediators of the Host Innate Immune System [My Copy] PLoS ONE, Vol. 4, No. 6. (18 June 2009), e5969. by Benjamin D. Greenbaum, Raul Rabadan, Arnold J. Levine posted to immune rna sequence by zwang on 2009-06-23 03:27:27 as along with 1 person friendpine
	The mouse Pol I terminator is more efficient than the hepatitis delta virus ribozyme in generating influenza-virus-like RNAs with precise 3′ ends in a plasmid-only-based virus rescue system [My Copy] Archives of Virology by Liqiang Feng, Feng Li, Xuehua Zheng, et al.Weiqi Pan, Kai Zhou, Yichu Liu, Hongxuan He, Ling Chen posted to influenza promoter rna terminator by zwang on 2009-06-17 02:25:16 as
	Genetic trans-Complementation Establishes a New Model for Influenza Virus RNA Transcription and Replication. [My Copy] PLoS pathogens, Vol. 5, No. 5. (May 2009) by N. Jorba, R. Coloma, J. Ortín posted to influenza replication rna transcription virus by zwang on 2009-06-01 02:53:16 as
	Evolution of Complex RNA Polymerases: The Complete Archaeal RNA Polymerase Structure [My Copy] PLoS Biology, Vol. 7, No. 5. (1 May 2009), e102. by Yakov Korkhin, Ulug M. Unligil, Otis Littlefield, et al.Pamlea J. Nelson, David I. Stuart, Paul B. Sigler, Stephen D. Bell, Nicola G. Abrescia posted to complex evolution polymerase rna structure by zwang on 2009-05-06 05:21:55 as along with 2 people inesdesantiago yves_cite
	Conserved and variable domains of RNase MRP RNA. [My Copy] RNA biology, Vol. 6, No. 3. (30 July 2009) by Marcela D. López, Magnus A. Rosenblad, Tore Samuelsson posted to domain rna rnasep by zwang on 2009-04-29 02:30:02 as
	Protein function annotation from sequence: prediction of residues interacting with RNA [My Copy] Bioinformatics (23 April 2009), btp257. by R. V. Spriggs, Y. Murakami, H. Nakamura, S. Jones posted to function interaction prediction rna sequence by zwang on 2009-04-25 07:40:25 as along with 2 people operon phoenixzxl
	Inhibitory effect of small interfering RNA specific for a novel candidate target in PB1 gene of influenza A virus [My Copy] Journal of Drug Targeting, Vol. 17, No. 2. (2009), pp. 133-139. by Congsheng Cheng, Lihong Yao, Aijun Chen, et al.Runqing Jia, Lifang Huan, Jianqiang Guo, Hong Bo, Yuelong Shu, Zhiqing Zhang posted to influenza polymerase rna virus by zwang on 2009-04-19 14:56:56 as
	IL-10-Dependent S100A8 Gene Induction in Monocytes/Macrophages by Double-Stranded RNA [My Copy] J Immunol, Vol. 182, No. 4. (15 February 2009), pp. 2258-2268. by Yasumi Endoh, Yuen M. Chung, Ian A. Clark, Carolyn L. Geczy, Kenneth Hsu posted to rna by zwang on 2009-03-06 02:03:51 as
	The role of RNA folding free energy in the evolution of the polymerase genes of the influenza A virus [My Copy] Genome Biology, Vol. 10 (12 February 2009), R18. by Rachel, Panayiotis V. Benos posted to evolution gene influenza polymerase rna virus by zwang on 2009-02-18 03:10:51 as along with 3 people friendpine samgj mhamada
	Nucleotide sequence requirements at the 5' end of the influenza A virus M RNA segment for efficient virus replication [My Copy] J. Virol. (21 January 2009), JVI.02513-08. by Makoto Ozawa, Junko Maeda, Kiyoko Iwatsuki-Horimoto, et al.Shinji Watanabe, Hideo Goto, Taisuke Horimoto, Yoshihiro Kawaoka posted to influenza replication rna sequence virus by zwang on 2009-02-06 08:30:44 as
	Structural Basis of the Influenza A Virus RNA Polymerase PB2 RNA-binding Domain Containing the Pathogenicity-determinant Lysine 627 Residue [My Copy] Journal of Biological Chemistry, Vol. 284, No. 11. (13 March 2009), pp. 6855-6860. by Takashi Kuzuhara, Daisuke Kise, Hiroko Yoshida, et al.Takahiro Horita, Yoshimi Murazaki, Akie Nishimura, Noriko Echigo, Hiroko Utsunomiya, Hideaki Tsuge posted to binding domain influenza polymerase rna virus by zwang on 2009-02-05 01:43:08 as along with 1 person dfdong
	Accurate SHAPE-directed RNA structure determination [My Copy] by Katherine posted to rna structure by zwang on 2009-01-09 09:07:32 as
	The host-dependent interaction of alpha-importins with influenza PB2 polymerase subunit is required for virus RNA replication. [My Copy] PLoS ONE, Vol. 3, No. 12. (2008) by P. Resa-Infante, N. Jorba, N. Zamarreño, Y. Fernández, S. Juárez, J. Ortín posted to hostspecialization influenza interaction polymerase rna by zwang on 2009-01-06 05:13:07 as
	Viral RNA polymerase complex promotes optimal growth of 1918 virus in the lower respiratory tract of ferrets [My Copy] by Tokiko posted to influenza polymerase rna virus by zwang on 2009-01-05 09:53:48 as
	Minor changes largely restore catalytic activity of archaeal RNase P RNA from Methanothermobacter thermoautotrophicus. [My Copy] Nucleic acids research (26 November 2008) by Dan Li, Dagmar K K. Willkomm, Roland K K. Hartmann posted to archaea rna rnasep by zwang on 2008-12-01 04:13:56 as
	Eukaryotic RNase PRole of RNA and Protein Subunits of a Primordial Catalytic Ribonucleoprotein in RNA-Based Catalysis [My Copy] Molecular Cell, Vol. 12, No. 4. (October 2003), pp. 925-935. by H. Mann posted to eukaryota human protein rna rnasep by zwang on 2008-11-12 02:15:50 as
	Effects of Retroviruses on Host Genome Function [My Copy] Annual Review of Genetics, Vol. 42, No. 1. (2008), pp. 709-732. by Patric Jern, John M. Coffin posted to evolution genome rna virus by zwang on 2008-11-06 02:02:46 as along with 2 people gwallau vpaces
	RNase P without RNA: Identification and Functional Reconstitution of the Human Mitochondrial tRNA Processing Enzyme [My Copy] cell posted to function human rna rnasep by zwang on 2008-11-03 10:11:25 as
	Diverse RNA-Binding Proteins Interact with Functionally Related Sets of RNAs, Suggesting an Extensive Regulatory System [My Copy] PLoS Biol, Vol. 6, No. 10. (28 October 2008), e255. by Daniel J. Hogan, Daniel P. Riordan, André P. Gerber, Daniel Herschlag, Patrick O. Brown posted to binding interaction protein rna by zwang on 2008-11-03 09:12:42 as along with 5 people and 1 group leemond31 kieran101 reyez stajich djkt Mycology
	Seeking Membranes: Positive-Strand RNA Virus Replication Complexes [My Copy] PLoS Biology, Vol. 6, No. 10. (1 October 2008), e270. by Mark R. Denison posted to complex rna virus by zwang on 2008-11-03 09:09:36 as
	RNA Structure: Reading the Ribosome [My Copy] Science, Vol. 309, No. 5740. (02 September 2005), pp. 1508-1514. by Harry F. Noller posted to rna secondary structure by zwang on 2008-10-09 05:09:34 as along with 3 people and 2 groups dayjm marcius jarasch BioinfoCIPF SGU-CIPF
	Structure of RapA, a Swi2/Snf2 Protein that Recycles RNA Polymerase During Transcription [My Copy] Structure, Vol. 16, No. 9. (10 September 2008), pp. 1417-1427. by Gary Shaw, Jianhua Gan, Yan N. Zhou, et al.Huijun Zhi, Priadarsini Subburaman, Rongguang Zhang, Andrzej Joachimiak, Ding J. Jin, Xinhua Ji posted to complex protein rna structure by zwang on 2008-09-11 13:26:52 as
	Classifying RNA-Binding Proteins Based on Electrostatic Properties [My Copy] PLoS Comput Biol, Vol. 4, No. 8. (2008), e1000146. by Shula Shazman, Yael Mandel-Gutfreund posted to binding protein rna by zwang on 2008-08-30 04:00:30 as along with 1 person Ema
	Efficient Algorithms for Probing the RNA Mutation Landscape [My Copy] PLoS Comput Biol, Vol. 4, No. 8. (2008), e1000124. by Jérôme Waldispühl, Srinivas Devadas, Bonnie Berger, Peter Clote posted to mutation rna secondary structure by zwang on 2008-08-30 03:59:05 as
	Genome-wide search for yeast RNase P substrates reveals role in maturation of intron-encoded box C/D small nucleolar RNAs [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 34. (2008), pp. 12218-12223. by Daniel J. Coughlin, Jeffrey A. Pleiss, Scott C. Walker, Gregg B. Whitworth, David R. Engelke posted to rna rnasep yeast by zwang on 2008-08-27 14:32:26 as along with 1 person and 1 group stajich Mycology
	Genome-wide search for yeast RNase P substrates reveals role in maturation of intron-encoded box C/D small nucleolar RNAs [My Copy] PNAS posted to rna rnasep yeast by zwang on 2008-08-23 10:00:44 as
	Bacterial RNase P RNA Is a Drug Target for Aminoglycoside−Arginine Conjugates [My Copy] Bioconjugate Chem. (20 August 2008) by Alexander Berchanski, Aviva Lapidot posted to bacterial rna rnasep by zwang on 2008-08-23 10:00:04 as
	Suppression of the MicroRNA Pathway by Bacterial Effector Proteins [My Copy] Science, Vol. 321, No. 5891. (15 August 2008), pp. 964-967. by Lionel Navarro, Florence Jay, Kinya Nomura, Sheng Y. He, Olivier Voinnet posted to bacterial protein rna by zwang on 2008-08-16 07:33:15 as along with 5 people druvus valeriehilgers rjlawren caizhiqiang erel10
	Small CRISPR RNAs Guide Antiviral Defense in Prokaryotes [My Copy] Science, Vol. 321, No. 5891. (15 August 2008), pp. 960-964. by Stan J. Brouns, Matthijs M. Jore, Magnus Lundgren, et al.Edze R. Westra, Rik J. Slijkhuis, Ambrosius P. Snijders, Mark J. Dickman, Kira S. Makarova, Eugene V. Koonin, John van der Oost posted to prokaryote rna by zwang on 2008-08-16 07:30:42 as along with 2 people azazello neils
	The Ascent of the Abundant: How Mutational Networks Constrain Evolution [My Copy] PLoS Comput Biol, Vol. 4, No. 7. (18 July 2008), e1000110. by Matthew C. Cowperthwaite, Evan P. Economo, William R. Harcombe, Eric L. Miller, Lauren A. Meyers posted to evolution modeling mutation network rna by zwang on 2008-07-22 06:59:06 as along with 6 people yyfwuhan Ema djkt friendpine biomcgary shoshin
	Tertiary Interactions Determine the Accuracy of RNA Folding [My Copy] posted to folding prediction rna by zwang on 2008-07-13 08:36:12 as
	Kinetic barriers and the role of topology in Protein and RNA folding. [My Copy] Protein Sci (23 May 2008), ps.036319.108. by Tobin R. Sosnick posted to folding interaction protein rna by zwang on 2008-07-01 08:50:56 as along with 2 people svozil ARobson
	Predicting novel RNA-RNA interactions. [My Copy] Current opinion in structural biology (14 May 2008) by Irmtraud M M. Meyer posted to interaction prediction rna structure by zwang on 2008-06-16 03:49:12 as along with 2 people and 1 group Hosna marck beta
	A map of human protein interactions derived from co-expression of human mRNAs and their orthologs [My Copy] Mol Syst Biol, Vol. 4 (15 April 2008) by Arun K. Ramani, Zhihua Li, G. Traver Hart, Mark W. Carlson, Daniel R. Boutz, Edward M. Marcotte posted to interaction ortholog protein rna by zwang on 2008-06-13 12:18:37 as along with 11 people and 2 groups kgutwin windman83 druvus jeremymiller tmmurali biomcgary phoenixzxl giovanni grahamc ardalby ptrobajo KeatingJClub OPIG
	Structural principles from large RNAs. [My Copy] Annual review of biophysics, Vol. 37, No. 1. (2008), pp. 445-464. by Stephen R. Holbrook posted to rna secondary structure by zwang on 2008-05-08 09:57:07 as along with 3 people balewis mhamada svozil
	Structure of Eukaryotic RNA Polymerases [My Copy] Annual Review of Biophysics, Vol. 37, No. 1. (2008), pp. 337-352. by P. Cramer, K. J. Armache, S. Baumli, et al.S. Benkert, F. Brueckner, C. Buchen, G. E. Damsma, S. Dengl, S. R. Geiger, A. J. Jasiak, A. Jawhari, S. Jennebach, T. Kamenski, H. Kettenberger, C. D. Kuhn, E. Lehmann, K. Leike, J. F. Sydow, A. Vannini posted to eukaryota rna structure by zwang on 2008-05-08 09:54:27 as along with 2 people margaritis gotant6884
	RNA Folding: Conformational Statistics, Folding Kinetics, and Ion Electrostatics [My Copy] Annual Review of Biophysics, Vol. 37, No. 1. (2008), pp. 197-214. by Shi J. Chen posted to folding rna by zwang on 2008-05-08 09:53:36 as
	Riboswitches: Emerging Themes in RNA Structure and Function [My Copy] Annual Review of Biophysics, Vol. 37, No. 1. (2008), pp. 117-133. by Rebecca K. Montange, Robert T. Batey posted to rna structure by zwang on 2008-05-08 09:48:18 as along with 2 people stk Vincent_Rouilly
	Single-molecule nonequilibrium periodic Mg2+-concentration jump experiments reveal details of the early folding pathways of a large RNA [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 18. (6 May 2008), pp. 6602-6607. by Xiaohui Qu, Glenna J. Smith, Kang T. Lee, Tobin R. Sosnick, Tao Pan, Norbert F. Scherer posted to fluorescent fret rna rnasep singlemolecule by zwang on 2008-05-05 14:20:56 as along with 1 person doktornoe
	Escherichia coli RNase P RNA: Substrate Ribose Modifications at G+1, but Not Nucleotide - 1/+73 Base Pairing, Affect the Transition State for Cleavage Chemistry [My Copy] Journal of Molecular Biology, Vol. In Press, Corrected Proof by Simona Cuzic, Karin A. Heidemann, Jens Wöhnert, Roland K. Hartmann posted to ecoli mutation rna rnasep by zwang on 2008-05-05 14:16:50 as
	Ionic interactions between PRNA and P protein in Bacillus subtilis RNase P characterized using a magnetocapture-based assay [My Copy] RNA, Vol. 10, No. 10. (1 October 2004), pp. 1595-1608. by Jeremy J. Day-Storms, S. Niranjanakumari, Carol A. Fierke posted to bacterial interaction magnetic protein rna rnasep by zwang on 2008-03-21 07:55:58 as
	Characterization of RNase P from Thermotoga maritima [My Copy] Nucl. Acids Res., Vol. 29, No. 4. (15 February 2001), pp. 880-885. by Ralf Paul, Denis Lazarev, Sidney Altman posted to protein rna rnasep by zwang on 2008-03-21 07:55:05 as
	PLoS Computational Biology: Evolutionary Patterns in the Sequence and Structure of Transfer RNA: Early Origins of Archaea and Viruses [My Copy] posted to archaea evolution rna sequence structure virus by zwang on 2008-03-20 13:24:28 as
	Structural inference of native and partially folded RNA by high-throughput contact mapping [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 11. (18 March 2008), pp. 4144-4149. by Rhiju Das, Madhuri Kudaravalli, Magdalena Jonikas, et al.Alain Laederach, Robert Fong, Jason P. Schwans, David Baker, Joseph A. Piccirilli, Russ B. Altman, Daniel Herschlag posted to contact folding rna structure by zwang on 2008-03-20 13:00:39 as along with 1 person and 1 group wsjames Oxford Virology
	Minimum information specification for in situ hybridization and immunohistochemistry experiments (MISFISHIE) [My Copy] Nature Biotechnology, Vol. 26, No. 3. (07 March 2008), pp. 305-312. by Eric W. Deutsch, Catherine A. Ball, Jules J. Berman, et al.G. Steven Bova, Alvis Brazma, Roger E. Bumgarner, David Campbell, Helen C. Causton, Jeffrey H. Christiansen, Fabrice Daian, Delphine Dauga, Duncan R. Davidson, Gregory Gimenez, Young A. Goo, Sean Grimmond, Thorsten Henrich, Bernhard G. Herrmann, Michael H. Johnson, Martin Korb, Jason C. Mills, Asa J. Oudes, Helen E. Parkinson, Laura E. Pascal, Nicolas Pollet, John Quackenbush, Mirana Ramialison, Martin Ringwald, David Salgado, Susanna-Assunta Sansone, Gavin Sherlock, Christian J. Stoeckert, Jason Swedlow, Ronald C. Taylor, Laura Walashek, Anthony Warford, David G. Wilkinson, Yi Zhou, Leonard I. Zon, Alvin Y. Liu, Lawrence D. True posted to immunohistochemistry protein rna by zwang on 2008-03-19 14:26:07 as along with 5 people and 1 group mordiano katerinakal guhjy psique jfr parkinson's disease references

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protein	358
influenza	248
structure	197
evolution	189
interaction	182
virus	155
network	132
prediction	109
rna	89
genome	77
domain	60
yeast	60
sequence	59
gene	54
complex	47
phylogeny	43
transcription	34
rnasep	33
co-evolution	32
avian	30
binding	30
dynamics	29
polymerase	29
mutation	28
folding	27
genome-wide	27
bacterial	26
dna	26
expression	23
motif	23
hemagglutinin	21
alignment	20
clustering	19
modeling	19
regulatory	19
site	19
human	18
antibody	17
eukaryota	17
regulation	16
function	15
genetic	15
design	14
fluorescent	14
drug	13
residue	13
synthetic	13
bayesian	12
metabolism	12
epitope	11
immunity	11
interface	10
microarray	10
pathway	10
promoter	10
algorithm	9
massspectrometry	9
diversity	8
ecoli	8
hiv	8
peptide	8
phenotype	8
bioinformatics	7
computational	7
invivo	7
replication	7
review	7
vaccine	7
y2h	7
chromatin	6
hostspecialization	6
specy	6
system	6
systematic	6
annotation	5
disease	5
fret	5
geneexpression	5
homology	5
insilico	5
mammal	5
nmr	5
phosphorylation	5
prokaryote	5
selection	5
substitution	5
subunit	5
swine	5
visualization	5
antigen	4
architecture	4
assembly	4
divergence	4
em	4
experiment	4
genetics	4
hierarchical	4
histone	4
localization	4
membrane	4
microrna	4
module	4
ncrna	4
nuclear	4
ortholog	4
proteomics	4
purification	4
rule	4
surface	4
svm	4
archaea	3
biofuel	3
cancer	3
cellcycle	3
coil	3
contact	3
deletion	3
element	3
genefamily	3
immune	3
m2	3
methylation	3
np	3
profile	3
protocol	3
reassortment	3
research	3
science	3
secondary	3
simulation	3
translation	3
ysd	3
accuracy	2
bifc	2
bootstrap	2
bret	2
chaperone	2
chromosome	2
cloning	2
comparativegenomics	2
cooccurrence	2
database	2
docking	2
endogenous	2
epistasis	2
fitness	2
homologymodeling	2
hub	2
information-theory	2
inhibition	2
likelihood	2
linker	2
mathematic	2
mhc	2
mi	2
molecularrecognition	2
mp	2
neural	2
ns	2
phylogeography	2
positiveselection	2
presentation	2
primer	2
ribozyme	2
singlemolecule	2
stability	2
target	2
technique	2
viability	2
web	2
bsi	1
clade	1
coevolution	1
co-extinction	1
collaboration	1
compensatory	1
confidence	1
counter	1
cpg-island	1
culture	1
degradation	1
detection	1
differentiation	1
duplication	1
ecology	1
emulation	1
enzyme	1
epigenetics	1
fuck	1
geneontology	1
generegulation	1
hgt	1
hla	1
hmm	1
immunohistochemistry	1
inhibitor	1
integration	1
invitro	1
lgt	1
magnetic	1
marker	1
model	1
morphological	1
mrp	1
nanopore	1
nanoscale	1
nature	1
neoselection	1
noise	1
oligonucleotide	1
oral	1
pathobiology	1
pca	1
plant	1
positiveepistasis	1
protection	1
qtl	1
reliability	1
reverse-engineering	1
ribosome	1
sampling	1
sequencing	1
similarity	1
singlecell	1
sites	1
social	1
speciation	1
statistical	1
strain	1
substrate_recognition	1
tag	1
tap	1
terminator	1
text-mining	1
theory	1
threading	1
tissue	1
tlr	1
transmembrane	1
trna	1
vesicle	1
video	1

zwang's rna [89 articles] Export

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