zwang's structure [197 articles] Export

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	Predicting new molecular targets for known drugs [My Copy] Nature, Vol. 462, No. 7270. (01 November 2009), pp. 175-181. by Michael J. Keiser, Vincent Setola, John J. Irwin, et al.Christian Laggner, Atheir I. Abbas, Sandra J. Hufeisen, Niels H. Jensen, Michael B. Kuijer, Roberto C. Matos, Thuy B. Tran, Ryan Whaley, Richard A. Glennon, Jerome Hert, Kelan L. H. Thomas, Douglas D. Edwards, Brian K. Shoichet, Bryan L. Roth posted to structure prediction drug by zwang on 2009-11-12 08:53:52 as along with 14 people and 1 group venancio okapi ahmetbakan zufar pablocarb TRHvidsten phoenixzxl qshao Yanno mnishimu tmmurali sjcockell seb1 abhishek_tiwari Journal picks
	Finding of residues crucial for supersecondary structure formation [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 45. (10 November 2009), pp. 18996-19000. by Alexander E. Kister, Israel Gelfand posted to structure protein by zwang on 2009-11-11 10:39:31 as along with 1 person dfdong
	Time-resolved RNA SHAPE chemistry: quantitative RNA structure analysis in one-second snapshots and at single-nucleotide resolution [My Copy] Nature Protocols, Vol. 4, No. 10. (10 September 2009), pp. 1413-1421. by Stefanie A. Mortimer, Kevin M. Weeks posted to structure rna by zwang on 2009-10-20 07:38:29 as
	Knowledge-Based Instantiation of Full Atomic Detail into Coarse Grain RNA 3D Structural Models [My Copy] Bioinformatics (7 October 2009), btp576. by Magdalena A. Jonikas, Randall J. Radmer, Russ B. Altman posted to structure rna model by zwang on 2009-10-14 09:45:06 as
	Structural relationships among proteins with different global topologies and their implications for function annotation strategies [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 41. (13 October 2009), pp. 17377-17382. by Donald Petrey, Markus Fischer, Barry Honig posted to structure protein by zwang on 2009-10-14 06:30:14 as along with 5 people and 1 group apaydin philcarter carlosjavierna TRHvidsten phoenixzxl Orengo Group Journal Picks
	Understanding hydrogen-bond patterns in proteins using network motifs [My Copy] Bioinformatics, Vol. 25, No. 22. (15 November 2009), pp. 2921-2928. by Ofer Rahat, Uri Alon, Yaakov Levy, Gideon Schreiber posted to structure protein motif by zwang on 2009-09-24 08:05:59 as along with 4 people tomhebbron VGreiff scmelton phoenixzxl
	Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima [My Copy] Science, Vol. 325, No. 5947. (18 September 2009), pp. 1544-1549. by Ying Zhang, Ines Thiele, Dana Weekes, et al.Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley M. Deacon, John Wooley, Scott A. Lesley, Ian A. Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik posted to structure network metabolism by zwang on 2009-09-24 08:03:06 as along with 13 people michaelbarton venancio schwartzjmc apocapoc eehsanipour riffraff reyez TRHvidsten flbarroso daveGerrard pablocarb phoenixzxl roys
	The continuity of protein structure space is an intrinsic property of proteins [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 37. (15 September 2009), pp. 15690-15695. by Jeffrey Skolnick, Adrian K. Arakaki, Seung Y. Lee, Michal Brylinski posted to structure protein by zwang on 2009-09-17 13:19:48 as along with 3 people docv TRHvidsten philomorph
	Structural domain-domain interactions: Assessment and comparison with protein-protein interaction data to improve the interactome. [My Copy] Proteins, Vol. 9999, No. 9999. (5 August 2009), NA. by C. Prieto, J. De Las Rivas posted to structure protein interaction domain by zwang on 2009-09-07 07:16:44 as along with 2 people higueruelo phoenixzxl
	Pushing Structural Information into the Yeast Interactome by High-Throughput Protein Docking Experiments [My Copy] PLoS Comput Biol, Vol. 5, No. 8. (28 August 2009), e1000490. by Roberto Mosca, Carles Pons, Juan Fernández-Recio, Patrick Aloy posted to yeast structure protein by zwang on 2009-09-05 13:49:46 as along with 4 people and 1 group klexa bdessailly phoenixzxl TRHvidsten Orengo Group Journal Picks
	Restriction versus guidance in protein structure prediction [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 36. (8 September 2009), pp. 15302-15307. by Joseph A. Hegler, Joachim LÃ¤tzer, Amarda Shehu, Cecilia Clementi, Peter G. Wolynes posted to structure protein prediction by zwang on 2009-08-31 15:12:45 as along with 2 people mkotlyar carlosjavierna
	Analysis of the Free-Energy Surface of Proteins from Reversible Folding Simulations [My Copy] PLoS Comput Biol, Vol. 5, No. 7. (10 July 2009), e1000428. by Lucy R. Allen, Sergei V. Krivov, Emanuele Paci posted to structure protein prediction by zwang on 2009-08-27 11:40:53 as along with 2 people melo_mcr Diego_Prada
	Sequence physical properties encode the global organization of protein structure space [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 34. (25 August 2009), pp. 14345-14348. by S. Rackovsky posted to structure sequence protein prediction by zwang on 2009-08-27 02:47:10 as along with 3 people phoenixzxl roys kevinchannon
	A Search for Energy Minimized Sequences of Proteins [My Copy] PLoS ONE, Vol. 4, No. 8. (19 August 2009), e6684. by Anupam N. Jha, G. K. Ananthasuresh, Saraswathi Vishveshwara posted to structure protein by zwang on 2009-08-25 10:08:38 as along with 1 person phoenixzxl
	Protein Sectors: Evolutionary Units of Three-Dimensional Structure [My Copy] posted to structure evolution by zwang on 2009-08-25 09:41:22 as along with 1 person phoenixzxl
	Efficient SCOP-fold classification and retrieval using index-based protein substructure alignments [My Copy] Bioinformatics, Vol. 25, No. 19. (1 October 2009), pp. 2559-2565. by Pin-Hao Chi, Bin Pang, Dmitry Korkin, Chi-Ren Shyu posted to structure protein alignment by zwang on 2009-08-17 11:45:58 as along with 2 people walshtp robfsouza
	Predicting RNA secondary structure based on the class information and Hopfield network [My Copy] Computers in Biology and Medicine, Vol. 39, No. 3. (March 2009), pp. 206-214. by Quan Zou, Tuo Zhao, Yang Liu, Maozu Guo posted to structure rna network by zwang on 2009-08-15 15:33:35 as
	Protein-Peptide Interactions Adopt the Same Structural Motifs as Monomeric Protein Folds [My Copy] cell posted to structure protein motif interaction by zwang on 2009-08-12 13:30:49 as
	The hemagglutinin structure of an avian H1N1 influenza A virus [My Copy] Virology (22 July 2009) by Tianwei Lin, Gengyan Wang, Anzhang Li, et al.Qian Zhang, Caiming Wu, Rongfu Zhang, Qixu Cai, Wenjun Song, Kwok-Yung Yuen posted to influenza structure virus by zwang on 2009-07-27 05:04:44 as
	A new method for revealing correlated mutations under the structural and functional constraints in proteins [My Copy] Bioinformatics, Vol. 25, No. 19. (1 October 2009), pp. 2506-2513. by Byung-Chul Lee, Dongsup Kim posted to co-evolution protein structure by zwang on 2009-07-24 12:12:54 as along with 5 people RebeccaHamer qluo jlike operon phoenixzxl
	Assessing the relevance of node features for network structure [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 28. (14 July 2009), pp. 11433-11438. by Ginestra Bianconi, Paolo Pin, Matteo Marsili posted to network structure by zwang on 2009-07-22 10:24:11 as along with 12 people rdiaz daforerog Kovanen apocapoc Diego_Prada winterstream trfield deanmalmgren tomt21 roys tmmurali statnet
	Nucleoside Monophosphate Complex Structures of the Endonuclease Domain from the Influenza Virus Polymerase PA Subunit Reveal the Substrate Binding Site inside the Catalytic Center [My Copy] J. Virol., Vol. 83, No. 18. (15 September 2009), pp. 9024-9030. by Cong Zhao, Zhiyong Lou, Yu Guo, et al.Ming Ma, Yutao Chen, Shuaiyi Liang, Liang Zhang, Shoudeng Chen, Xuemei Li, Yingfang Liu, Mark Bartlam, Zihe Rao posted to domain influenza polymerase structure by zwang on 2009-07-13 09:15:53 as along with 1 person carlosjavierna
	Design of therapeutic proteins with enhanced stability. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 106, No. 29. (21 July 2009), pp. 11937-11942. by Naresh Chennamsetty, Vladimir Voynov, Veysel Kayser, Bernhard Helk, Bernhardt L. Trout posted to protein structure by zwang on 2009-07-09 04:08:58 as along with 5 people guhjy biomcgary marti phoenixzxl edws
	Structural insight into the essential PB1-PB2 subunit contact of the influenza virus RNA polymerase [My Copy] EMBO J, Vol. 28, No. 12. (17 June 2009), pp. 1803-1811. by Kanako Sugiyama, Eiji Obayashi, Atsushi Kawaguchi, et al.Yukari Suzuki, Jeremy R. Tame, Kyosuke Nagata, Sam-Yong Park posted to complex polymerase structure by zwang on 2009-06-30 09:24:28 as
	Global distribution of conformational states derived from redundant models in the PDB points to non-uniqueness of the protein structure [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 26. (30 June 2009), pp. 10505-10510. by Prasad V. Burra, Ying Zhang, Adam Godzik, Boguslaw Stec posted to protein structure by zwang on 2009-06-30 09:14:25 as along with 6 people and 1 group ubcg08l apaydin sobolevnrm philcarter aalibes TRHvidsten Orengo Group Journal Picks
	The Structure of a Biologically Active Influenza Virus Ribonucleoprotein Complex [My Copy] PLoS Pathog, Vol. 5, No. 6. (26 June 2009), e1000491. by Rocío Coloma, José M. Valpuesta, Rocío Arranz, José L. Carrascosa, Juan Ortín, Jaime Martín-Benito posted to complex influenza structure by zwang on 2009-06-29 08:30:21 as
	Exploring the Free Energy Landscape: From Dynamics to Networks and Back [My Copy] PLoS Comput Biol, Vol. 5, No. 6. (26 June 2009), e1000415. by Diego Prada-Gracia, Jesús Gómez-Gardeñes, Pablo Echenique, Fernando Falo posted to dynamics network protein structure by zwang on 2009-06-27 11:53:41 as along with 6 people Fernando_FF sobolevnrm kiekyon phoenixzxl edws Diego_Prada
	RosettaLigand Docking with Full Ligand and Receptor Flexibility. [My Copy] Journal of molecular biology (18 November 2008) by Ian W W. Davis, David Baker posted to protein structure by zwang on 2009-06-27 11:52:51 as along with 2 people and 1 group barry oteri McCammon
	Structural Alphabets for Protein Structure Classification: A Comparison Study [My Copy] Journal of Molecular Biology (25 December 2008) by Q. Le, G. Pollastri, P. Koehl posted to protein structure by zwang on 2009-06-27 11:52:30 as along with 4 people and 2 groups svozil idoerg barry reyez structural_bioinformatics Bioinformatics
	Improved beta-protein structure prediction by multilevel optimization of nonlocal strand pairings and local backbone conformation [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2006), NA. by Philip Bradley, David Baker posted to prediction protein structure by zwang on 2009-06-11 13:52:03 as along with 2 people dgront wouterboomsma
	The Roles of Entropy and Kinetics in Structure Prediction [My Copy] PLoS ONE, Vol. 4, No. 6. (9 June 2009), e5840. by Gregory R. Bowman, Vijay S. Pande posted to prediction structure by zwang on 2009-06-11 03:47:45 as along with 1 person kiekyon
	Thermodynamic and structural investigation of bi-specificity in protein-protein interactions [My Copy] Journal of Molecular Biology (08 April 2009) by Huaying Zhao, Saranga Naganathan, Dorothy Beckett posted to interaction protein structure by zwang on 2009-05-18 05:37:07 as along with 2 people higueruelo paulschlesinger
	Structure and Dynamics of Membrane Proteins by Magic Angle Spinning Solid-State NMR [My Copy] Annual Review of Biophysics, Vol. 38, No. 1. (2009), pp. 385-403. by Ann McDermott posted to nmr protein structure by zwang on 2009-05-07 05:31:38 as along with 4 people agrossfield andreasauerwein leocmcheung viktor21614
	Evolution of Complex RNA Polymerases: The Complete Archaeal RNA Polymerase Structure [My Copy] PLoS Biology, Vol. 7, No. 5. (1 May 2009), e102. by Yakov Korkhin, Ulug M. Unligil, Otis Littlefield, et al.Pamlea J. Nelson, David I. Stuart, Paul B. Sigler, Stephen D. Bell, Nicola G. Abrescia posted to complex evolution polymerase rna structure by zwang on 2009-05-06 05:21:55 as along with 2 people inesdesantiago yves_cite
	Nothing about protein structure classification makes sense except in the light of evolution [My Copy] Current Opinion in Structural Biology, Vol. 19, No. 3. (24 June 2009), pp. 329-334. by Ruben E. Valas, Song Yang, Philip E. Bourne posted to evolution protein structure by zwang on 2009-04-28 05:11:52 as along with 12 people and 3 groups mkotlyar skywalkerus02 dgront nyyu robfsouza apaydin barry coela Zephyrus sobolevnrm friendpine paulschlesinger structural_bioinformatics R.E.A.D baker-group
	Structure and dynamics of the influenza A M2 Channel: a comparison of three structures [My Copy] Journal of Molecular Modeling, Vol. 15, No. 11. (1 November 2009), pp. 1317-1328. by Hadas Leonov, Isaiah Arkin posted to influenza m2 structure by zwang on 2009-04-25 07:43:32 as
	Enhanced Exposure of the CD4-Binding Site to Neutralizing Antibodies by Structural Design of a Membrane-Anchored Human Immunodeficiency Virus Type 1 gp120 Domain [My Copy] J. Virol., Vol. 83, No. 10. (15 May 2009), pp. 5077-5086. by Lan Wu, Tongqing Zhou, Zhi-Yong Yang, et al.Krisha Svehla, Sijy O'Dell, Mark K. Louder, Ling Xu, John R. Mascola, Dennis R. Burton, James A. Hoxie, Robert W. Doms, Peter D. Kwong, Gary J. Nabel posted to binding domain influenza structure by zwang on 2009-04-22 10:23:42 as
	An Analytically Solvable Model for Rapid Evolution of Modular Structure [My Copy] PLoS Comput Biol, Vol. 5, No. 4. (10 April 2009), e1000355. by Nadav Kashtan, Avi E. Mayo, Tomer Kalisky, Uri Alon posted to evolution structure by zwang on 2009-04-10 07:42:15 as along with 5 people jjray niallhaslam djkt ocs friendpine
	A general protocol for the crystallization of membrane proteins for X-ray structural investigation [My Copy] Nat. Protocols, Vol. 4, No. 5. (April 2009), pp. 619-637. by Zachary E. Newby, Joseph D. O'Connell, Franz Gruswitz, et al.Franklin A. Hays, William E. Harries, Ian M. Harwood, Joseph D. Ho, John K. Lee, David F. Savage, Larry J. Miercke, Robert M. Stroud posted to protein protocol structure by zwang on 2009-04-10 07:38:04 as
	Sequencing and Analyses of All Known Human Rhinovirus Genomes Reveals Structure and Evolution [My Copy] Science (12 February 2009), 1165557. by Ann C. Palmenberg, David Spiro, Ryan Kuzmickas, et al.Shiliang Wang, Appolinaire Djikeng, Jennifer A. Rathe, Claire M. Fraser-Liggett, Stephen B. Liggett posted to evolution genome structure by zwang on 2009-04-08 16:56:16 as along with 11 people and 1 group memerman coela renatomilani farhat sen_cheng VGreiff wsjames neils ianholmes kshundyak jbhiatt Oxford Virology
	Protein structure prediction: when is it useful? [My Copy] Current Opinion in Structural Biology (25 March 2009) by Yang Zhang posted to prediction protein structure by zwang on 2009-03-31 09:02:29 as along with 3 people Jporci paulschlesinger phoenixzxl
	Structural analysis of the nuclear pore complex by integrated approaches [My Copy] Current Opinion in Structural Biology (25 March 2009) by Nadav Elad, Tal Maimon, Daphna Frenkiel-Krispin, Roderick Y. H. Lim, Ohad Medalia posted to complex structure by zwang on 2009-03-31 09:01:36 as
	Intrinsic Disorder in Protein Interactions: Insights From a Comprehensive Structural Analysis [My Copy] PLoS Comput Biol, Vol. 5, No. 3. (13 March 2009), e1000316. by Jessica H. Fong, Benjamin A. Shoemaker, Sergiy O. Garbuzynskiy, Michail Y. Lobanov, Oxana V. Galzitskaya, Anna R. Panchenko posted to interaction protein structure by zwang on 2009-03-31 08:56:19 as along with 7 people kiekyon agustinarce pablocarb chica phoenixzxl bobychan bpcusack
	‘Flu’ and structure-based drug design [My Copy] Structure, Vol. 5, No. 9. (15 September 1997), pp. 1139-1145. by Rebecca C. Wade posted to drug influenza structure by zwang on 2009-03-28 03:32:18 as along with 1 person friendpine
	The protein-small-molecule database, a non-redundant structural resource for the analysis of protein-ligand binding [My Copy] Bioinformatics, Vol. 25, No. 5. (1 March 2009), pp. 615-620. by Izhar Wallach, Ryan Lilien posted to binding protein structure by zwang on 2009-03-11 01:16:05 as along with 5 people ucbcjbm reyez carlosjavierna pauldobson apaydin
	An evolutionary and structural characterization of mammalian protein complex organization. [My Copy] BMC genomics, Vol. 9, No. 1. (23 December 2008) by Philip Wong, Sonja Althammer, Andrea Hildebrand, et al.Andreas Kirschner, Philipp Pagel, Bernd Geissler, Pawel Smialowski, Florian Blöchl, Matthias Oesterheld, Thorsten Schmidt, Normann Strack, Fabian J. Theis, Andreas Ruepp, Dmitrij Frishman posted to complex evolution protein structure by zwang on 2009-03-05 02:08:30 as along with 3 people chica phoenixzxl chad_davis
	Structural and functional bases for broad-spectrum neutralization of avian and human influenza A viruses [My Copy] Nat Struct Mol Biol, Vol. 16, No. 3. (22 March 2009), pp. 265-273. by Jianhua Sui, William C. Hwang, Sandra Perez, et al.Ge Wei, Daniel Aird, Li-Mei Chen, Eugenio Santelli, Boguslaw Stec, Greg Cadwell, Maryam Ali, Hongquan Wan, Akikazu Murakami, Anuradha Yammanuru, Thomas Han, Nancy J. Cox, Laurie A. Bankston, Ruben O. Donis, Robert C. Liddington, Wayne A. Marasco posted to human influenza structure virus by zwang on 2009-02-25 01:53:11 as along with 2 people and 1 group sstcyr marywaye SSM2_09
	Mimicking the folding pathway to improve homology-free protein structure prediction [My Copy] Proceedings of the National Academy of Sciences (23 February 2009) by Joe Debartolo, Andrés Colubri, Abhishek K. Jha, James E. Fitzgerald, Karl F. Freed, Tobin R. Sosnick posted to homology prediction protein structure by zwang on 2009-02-24 07:43:58 as along with 2 people apaydin paulschlesinger
	Computational structure-based redesign of enzyme activity. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 106, No. 10. (10 March 2009), pp. 3764-3769. by C. Y. Chen, I. Georgiev, A. C. Anderson, B. R. Donald posted to design enzyme structure by zwang on 2009-02-24 07:40:58 as along with 3 people barmak7282 baiaixi apaydin
	Combining mutual information with structural analysis to screen for functionally important residues in influenza hemagglutinin. [My Copy] Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing (2009), pp. 492-503. by P. M. Kasson, V. S. Pande posted to co-evolution hemagglutinin influenza mi residue structure by zwang on 2009-02-16 03:11:04 as

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protein	358
influenza	248
structure	197
evolution	189
interaction	182
virus	155
network	132
prediction	109
rna	89
genome	77
domain	60
yeast	60
sequence	59
gene	54
complex	47
phylogeny	43
transcription	34
rnasep	33
co-evolution	32
avian	30
binding	30
dynamics	29
polymerase	29
mutation	28
folding	27
genome-wide	27
bacterial	26
dna	26
expression	23
motif	23
hemagglutinin	21
alignment	20
clustering	19
modeling	19
regulatory	19
site	19
human	18
antibody	17
eukaryota	17
regulation	16
function	15
genetic	15
design	14
fluorescent	14
drug	13
residue	13
synthetic	13
bayesian	12
metabolism	12
epitope	11
immunity	11
interface	10
microarray	10
pathway	10
promoter	10
algorithm	9
massspectrometry	9
diversity	8
ecoli	8
hiv	8
peptide	8
phenotype	8
bioinformatics	7
computational	7
invivo	7
replication	7
review	7
vaccine	7
y2h	7
chromatin	6
hostspecialization	6
specy	6
system	6
systematic	6
annotation	5
disease	5
fret	5
geneexpression	5
homology	5
insilico	5
mammal	5
nmr	5
phosphorylation	5
prokaryote	5
selection	5
substitution	5
subunit	5
swine	5
visualization	5
antigen	4
architecture	4
assembly	4
divergence	4
em	4
experiment	4
genetics	4
hierarchical	4
histone	4
localization	4
membrane	4
microrna	4
module	4
ncrna	4
nuclear	4
ortholog	4
proteomics	4
purification	4
rule	4
surface	4
svm	4
archaea	3
biofuel	3
cancer	3
cellcycle	3
coil	3
contact	3
deletion	3
element	3
genefamily	3
immune	3
m2	3
methylation	3
np	3
profile	3
protocol	3
reassortment	3
research	3
science	3
secondary	3
simulation	3
translation	3
ysd	3
accuracy	2
bifc	2
bootstrap	2
bret	2
chaperone	2
chromosome	2
cloning	2
comparativegenomics	2
cooccurrence	2
database	2
docking	2
endogenous	2
epistasis	2
fitness	2
homologymodeling	2
hub	2
information-theory	2
inhibition	2
likelihood	2
linker	2
mathematic	2
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mi	2
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mp	2
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web	2
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collaboration	1
compensatory	1
confidence	1
counter	1
cpg-island	1
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degradation	1
detection	1
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emulation	1
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fuck	1
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nature	1
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noise	1
oligonucleotide	1
oral	1
pathobiology	1
pca	1
plant	1
positiveepistasis	1
protection	1
qtl	1
reliability	1
reverse-engineering	1
ribosome	1
sampling	1
sequencing	1
similarity	1
singlecell	1
sites	1
social	1
speciation	1
statistical	1
strain	1
substrate_recognition	1
tag	1
tap	1
terminator	1
text-mining	1
theory	1
threading	1
tissue	1
tlr	1
transmembrane	1
trna	1
vesicle	1
video	1

zwang's structure [197 articles] Export

zwang's tags